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A lightweight transformer for faster and robust EBSD data collection

Three dimensional electron back-scattered diffraction (EBSD) microscopy is a critical tool in many applications in materials science, yet its data quality can fluctuate greatly during the arduous collection process, particularly via serial-sectioning. Fortunately, 3D EBSD data is inherently sequenti...

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Detalles Bibliográficos
Autores principales: Dong, Harry, Donegan, Sean, Shah, Megna, Chi, Yuejie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10692076/
https://www.ncbi.nlm.nih.gov/pubmed/38040823
http://dx.doi.org/10.1038/s41598-023-47936-6
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author Dong, Harry
Donegan, Sean
Shah, Megna
Chi, Yuejie
author_facet Dong, Harry
Donegan, Sean
Shah, Megna
Chi, Yuejie
author_sort Dong, Harry
collection PubMed
description Three dimensional electron back-scattered diffraction (EBSD) microscopy is a critical tool in many applications in materials science, yet its data quality can fluctuate greatly during the arduous collection process, particularly via serial-sectioning. Fortunately, 3D EBSD data is inherently sequential, opening up the opportunity to use transformers, state-of-the-art deep learning architectures that have made breakthroughs in a plethora of domains, for data processing and recovery. To be more robust to errors and accelerate this 3D EBSD data collection, we introduce a two step method that recovers missing slices in an 3D EBSD volume, using an efficient transformer model and a projection algorithm to process the transformer’s outputs. Overcoming the computational and practical hurdles of deep learning with scarce high dimensional data, we train this model using only synthetic 3D EBSD data with self-supervision and obtain superior recovery accuracy on real 3D EBSD data, compared to existing methods.
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spelling pubmed-106920762023-12-03 A lightweight transformer for faster and robust EBSD data collection Dong, Harry Donegan, Sean Shah, Megna Chi, Yuejie Sci Rep Article Three dimensional electron back-scattered diffraction (EBSD) microscopy is a critical tool in many applications in materials science, yet its data quality can fluctuate greatly during the arduous collection process, particularly via serial-sectioning. Fortunately, 3D EBSD data is inherently sequential, opening up the opportunity to use transformers, state-of-the-art deep learning architectures that have made breakthroughs in a plethora of domains, for data processing and recovery. To be more robust to errors and accelerate this 3D EBSD data collection, we introduce a two step method that recovers missing slices in an 3D EBSD volume, using an efficient transformer model and a projection algorithm to process the transformer’s outputs. Overcoming the computational and practical hurdles of deep learning with scarce high dimensional data, we train this model using only synthetic 3D EBSD data with self-supervision and obtain superior recovery accuracy on real 3D EBSD data, compared to existing methods. Nature Publishing Group UK 2023-12-01 /pmc/articles/PMC10692076/ /pubmed/38040823 http://dx.doi.org/10.1038/s41598-023-47936-6 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Dong, Harry
Donegan, Sean
Shah, Megna
Chi, Yuejie
A lightweight transformer for faster and robust EBSD data collection
title A lightweight transformer for faster and robust EBSD data collection
title_full A lightweight transformer for faster and robust EBSD data collection
title_fullStr A lightweight transformer for faster and robust EBSD data collection
title_full_unstemmed A lightweight transformer for faster and robust EBSD data collection
title_short A lightweight transformer for faster and robust EBSD data collection
title_sort lightweight transformer for faster and robust ebsd data collection
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10692076/
https://www.ncbi.nlm.nih.gov/pubmed/38040823
http://dx.doi.org/10.1038/s41598-023-47936-6
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