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A lightweight transformer for faster and robust EBSD data collection
Three dimensional electron back-scattered diffraction (EBSD) microscopy is a critical tool in many applications in materials science, yet its data quality can fluctuate greatly during the arduous collection process, particularly via serial-sectioning. Fortunately, 3D EBSD data is inherently sequenti...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10692076/ https://www.ncbi.nlm.nih.gov/pubmed/38040823 http://dx.doi.org/10.1038/s41598-023-47936-6 |
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author | Dong, Harry Donegan, Sean Shah, Megna Chi, Yuejie |
author_facet | Dong, Harry Donegan, Sean Shah, Megna Chi, Yuejie |
author_sort | Dong, Harry |
collection | PubMed |
description | Three dimensional electron back-scattered diffraction (EBSD) microscopy is a critical tool in many applications in materials science, yet its data quality can fluctuate greatly during the arduous collection process, particularly via serial-sectioning. Fortunately, 3D EBSD data is inherently sequential, opening up the opportunity to use transformers, state-of-the-art deep learning architectures that have made breakthroughs in a plethora of domains, for data processing and recovery. To be more robust to errors and accelerate this 3D EBSD data collection, we introduce a two step method that recovers missing slices in an 3D EBSD volume, using an efficient transformer model and a projection algorithm to process the transformer’s outputs. Overcoming the computational and practical hurdles of deep learning with scarce high dimensional data, we train this model using only synthetic 3D EBSD data with self-supervision and obtain superior recovery accuracy on real 3D EBSD data, compared to existing methods. |
format | Online Article Text |
id | pubmed-10692076 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-106920762023-12-03 A lightweight transformer for faster and robust EBSD data collection Dong, Harry Donegan, Sean Shah, Megna Chi, Yuejie Sci Rep Article Three dimensional electron back-scattered diffraction (EBSD) microscopy is a critical tool in many applications in materials science, yet its data quality can fluctuate greatly during the arduous collection process, particularly via serial-sectioning. Fortunately, 3D EBSD data is inherently sequential, opening up the opportunity to use transformers, state-of-the-art deep learning architectures that have made breakthroughs in a plethora of domains, for data processing and recovery. To be more robust to errors and accelerate this 3D EBSD data collection, we introduce a two step method that recovers missing slices in an 3D EBSD volume, using an efficient transformer model and a projection algorithm to process the transformer’s outputs. Overcoming the computational and practical hurdles of deep learning with scarce high dimensional data, we train this model using only synthetic 3D EBSD data with self-supervision and obtain superior recovery accuracy on real 3D EBSD data, compared to existing methods. Nature Publishing Group UK 2023-12-01 /pmc/articles/PMC10692076/ /pubmed/38040823 http://dx.doi.org/10.1038/s41598-023-47936-6 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Dong, Harry Donegan, Sean Shah, Megna Chi, Yuejie A lightweight transformer for faster and robust EBSD data collection |
title | A lightweight transformer for faster and robust EBSD data collection |
title_full | A lightweight transformer for faster and robust EBSD data collection |
title_fullStr | A lightweight transformer for faster and robust EBSD data collection |
title_full_unstemmed | A lightweight transformer for faster and robust EBSD data collection |
title_short | A lightweight transformer for faster and robust EBSD data collection |
title_sort | lightweight transformer for faster and robust ebsd data collection |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10692076/ https://www.ncbi.nlm.nih.gov/pubmed/38040823 http://dx.doi.org/10.1038/s41598-023-47936-6 |
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