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Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone
Hemoproteins have recently emerged as promising biocatalysts for new-to-nature carbene transfer reactions. However, mechanistic understanding of the interplay between productive and unproductive pathways in these processes is limited. Using spectroscopic, structural, and computational methods, we in...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10693563/ https://www.ncbi.nlm.nih.gov/pubmed/38042860 http://dx.doi.org/10.1038/s41467-023-43559-7 |
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author | Nam, Donggeon Bacik, John-Paul Khade, Rahul L. Aguilera, Maria Camila Wei, Yang Villada, Juan D. Neidig, Michael L. Zhang, Yong Ando, Nozomi Fasan, Rudi |
author_facet | Nam, Donggeon Bacik, John-Paul Khade, Rahul L. Aguilera, Maria Camila Wei, Yang Villada, Juan D. Neidig, Michael L. Zhang, Yong Ando, Nozomi Fasan, Rudi |
author_sort | Nam, Donggeon |
collection | PubMed |
description | Hemoproteins have recently emerged as promising biocatalysts for new-to-nature carbene transfer reactions. However, mechanistic understanding of the interplay between productive and unproductive pathways in these processes is limited. Using spectroscopic, structural, and computational methods, we investigate the mechanism of a myoglobin-catalyzed cyclopropanation reaction with diazoketones. These studies shed light on the nature and kinetics of key catalytic steps in this reaction, including the formation of an early heme-bound diazo complex intermediate, the rate-determining nature of carbene formation, and the cyclopropanation mechanism. Our analyses further reveal the existence of a complex mechanistic manifold for this reaction that includes a competing pathway resulting in the formation of an N-bound carbene adduct of the heme cofactor, which was isolated and characterized by X-ray crystallography, UV-Vis, and Mössbauer spectroscopy. This species can regenerate the active biocatalyst, constituting a non-productive, yet non-destructive detour from the main catalytic cycle. These findings offer a valuable framework for both mechanistic analysis and design of hemoprotein-catalyzed carbene transfer reactions. |
format | Online Article Text |
id | pubmed-10693563 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-106935632023-12-04 Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone Nam, Donggeon Bacik, John-Paul Khade, Rahul L. Aguilera, Maria Camila Wei, Yang Villada, Juan D. Neidig, Michael L. Zhang, Yong Ando, Nozomi Fasan, Rudi Nat Commun Article Hemoproteins have recently emerged as promising biocatalysts for new-to-nature carbene transfer reactions. However, mechanistic understanding of the interplay between productive and unproductive pathways in these processes is limited. Using spectroscopic, structural, and computational methods, we investigate the mechanism of a myoglobin-catalyzed cyclopropanation reaction with diazoketones. These studies shed light on the nature and kinetics of key catalytic steps in this reaction, including the formation of an early heme-bound diazo complex intermediate, the rate-determining nature of carbene formation, and the cyclopropanation mechanism. Our analyses further reveal the existence of a complex mechanistic manifold for this reaction that includes a competing pathway resulting in the formation of an N-bound carbene adduct of the heme cofactor, which was isolated and characterized by X-ray crystallography, UV-Vis, and Mössbauer spectroscopy. This species can regenerate the active biocatalyst, constituting a non-productive, yet non-destructive detour from the main catalytic cycle. These findings offer a valuable framework for both mechanistic analysis and design of hemoprotein-catalyzed carbene transfer reactions. Nature Publishing Group UK 2023-12-02 /pmc/articles/PMC10693563/ /pubmed/38042860 http://dx.doi.org/10.1038/s41467-023-43559-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Nam, Donggeon Bacik, John-Paul Khade, Rahul L. Aguilera, Maria Camila Wei, Yang Villada, Juan D. Neidig, Michael L. Zhang, Yong Ando, Nozomi Fasan, Rudi Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone |
title | Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone |
title_full | Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone |
title_fullStr | Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone |
title_full_unstemmed | Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone |
title_short | Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone |
title_sort | mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10693563/ https://www.ncbi.nlm.nih.gov/pubmed/38042860 http://dx.doi.org/10.1038/s41467-023-43559-7 |
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