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Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone

Hemoproteins have recently emerged as promising biocatalysts for new-to-nature carbene transfer reactions. However, mechanistic understanding of the interplay between productive and unproductive pathways in these processes is limited. Using spectroscopic, structural, and computational methods, we in...

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Autores principales: Nam, Donggeon, Bacik, John-Paul, Khade, Rahul L., Aguilera, Maria Camila, Wei, Yang, Villada, Juan D., Neidig, Michael L., Zhang, Yong, Ando, Nozomi, Fasan, Rudi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10693563/
https://www.ncbi.nlm.nih.gov/pubmed/38042860
http://dx.doi.org/10.1038/s41467-023-43559-7
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author Nam, Donggeon
Bacik, John-Paul
Khade, Rahul L.
Aguilera, Maria Camila
Wei, Yang
Villada, Juan D.
Neidig, Michael L.
Zhang, Yong
Ando, Nozomi
Fasan, Rudi
author_facet Nam, Donggeon
Bacik, John-Paul
Khade, Rahul L.
Aguilera, Maria Camila
Wei, Yang
Villada, Juan D.
Neidig, Michael L.
Zhang, Yong
Ando, Nozomi
Fasan, Rudi
author_sort Nam, Donggeon
collection PubMed
description Hemoproteins have recently emerged as promising biocatalysts for new-to-nature carbene transfer reactions. However, mechanistic understanding of the interplay between productive and unproductive pathways in these processes is limited. Using spectroscopic, structural, and computational methods, we investigate the mechanism of a myoglobin-catalyzed cyclopropanation reaction with diazoketones. These studies shed light on the nature and kinetics of key catalytic steps in this reaction, including the formation of an early heme-bound diazo complex intermediate, the rate-determining nature of carbene formation, and the cyclopropanation mechanism. Our analyses further reveal the existence of a complex mechanistic manifold for this reaction that includes a competing pathway resulting in the formation of an N-bound carbene adduct of the heme cofactor, which was isolated and characterized by X-ray crystallography, UV-Vis, and Mössbauer spectroscopy. This species can regenerate the active biocatalyst, constituting a non-productive, yet non-destructive detour from the main catalytic cycle. These findings offer a valuable framework for both mechanistic analysis and design of hemoprotein-catalyzed carbene transfer reactions.
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spelling pubmed-106935632023-12-04 Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone Nam, Donggeon Bacik, John-Paul Khade, Rahul L. Aguilera, Maria Camila Wei, Yang Villada, Juan D. Neidig, Michael L. Zhang, Yong Ando, Nozomi Fasan, Rudi Nat Commun Article Hemoproteins have recently emerged as promising biocatalysts for new-to-nature carbene transfer reactions. However, mechanistic understanding of the interplay between productive and unproductive pathways in these processes is limited. Using spectroscopic, structural, and computational methods, we investigate the mechanism of a myoglobin-catalyzed cyclopropanation reaction with diazoketones. These studies shed light on the nature and kinetics of key catalytic steps in this reaction, including the formation of an early heme-bound diazo complex intermediate, the rate-determining nature of carbene formation, and the cyclopropanation mechanism. Our analyses further reveal the existence of a complex mechanistic manifold for this reaction that includes a competing pathway resulting in the formation of an N-bound carbene adduct of the heme cofactor, which was isolated and characterized by X-ray crystallography, UV-Vis, and Mössbauer spectroscopy. This species can regenerate the active biocatalyst, constituting a non-productive, yet non-destructive detour from the main catalytic cycle. These findings offer a valuable framework for both mechanistic analysis and design of hemoprotein-catalyzed carbene transfer reactions. Nature Publishing Group UK 2023-12-02 /pmc/articles/PMC10693563/ /pubmed/38042860 http://dx.doi.org/10.1038/s41467-023-43559-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Nam, Donggeon
Bacik, John-Paul
Khade, Rahul L.
Aguilera, Maria Camila
Wei, Yang
Villada, Juan D.
Neidig, Michael L.
Zhang, Yong
Ando, Nozomi
Fasan, Rudi
Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone
title Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone
title_full Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone
title_fullStr Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone
title_full_unstemmed Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone
title_short Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone
title_sort mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10693563/
https://www.ncbi.nlm.nih.gov/pubmed/38042860
http://dx.doi.org/10.1038/s41467-023-43559-7
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