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Role of stacking interactions in the binding sequence preferences of DNA bis-intercalators: insight from thermodynamic integration free energy simulations

The major structural determinant of the preference to bind to CpG binding sites on DNA exhibited by the natural quinoxaline bis-intercalators echinomycin and triostin A, or the quinoline echinomycin derivative, 2QN, is the 2-amino group of guanine (G). However, relocation of this group by means of i...

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Detalles Bibliográficos
Autores principales: Marco, Esther, Negri, Ana, Luque, F. Javier, Gago, Federico
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2005
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1283521/
https://www.ncbi.nlm.nih.gov/pubmed/16282585
http://dx.doi.org/10.1093/nar/gki916