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TreeFam: a curated database of phylogenetic trees of animal gene families
TreeFam is a database of phylogenetic trees of gene families found in animals. It aims to develop a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments. Curated families are being added progressively, base...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2006
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347480/ https://www.ncbi.nlm.nih.gov/pubmed/16381935 http://dx.doi.org/10.1093/nar/gkj118 |
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author | Li, Heng Coghlan, Avril Ruan, Jue Coin, Lachlan James Hériché, Jean-Karim Osmotherly, Lara Li, Ruiqiang Liu, Tao Zhang, Zhang Bolund, Lars Wong, Gane Ka-Shu Zheng, Weimou Dehal, Paramvir Wang, Jun Durbin, Richard |
author_facet | Li, Heng Coghlan, Avril Ruan, Jue Coin, Lachlan James Hériché, Jean-Karim Osmotherly, Lara Li, Ruiqiang Liu, Tao Zhang, Zhang Bolund, Lars Wong, Gane Ka-Shu Zheng, Weimou Dehal, Paramvir Wang, Jun Durbin, Richard |
author_sort | Li, Heng |
collection | PubMed |
description | TreeFam is a database of phylogenetic trees of gene families found in animals. It aims to develop a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments. Curated families are being added progressively, based on seed alignments and trees in a similar fashion to Pfam. Release 1.1 of TreeFam contains curated trees for 690 families and automatically generated trees for another 11 646 families. These represent over 128 000 genes from nine fully sequenced animal genomes and over 45 000 other animal proteins from UniProt; ∼40–85% of proteins encoded in the fully sequenced animal genomes are included in TreeFam. TreeFam is freely available at and . |
format | Text |
id | pubmed-1347480 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2006 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-13474802006-01-25 TreeFam: a curated database of phylogenetic trees of animal gene families Li, Heng Coghlan, Avril Ruan, Jue Coin, Lachlan James Hériché, Jean-Karim Osmotherly, Lara Li, Ruiqiang Liu, Tao Zhang, Zhang Bolund, Lars Wong, Gane Ka-Shu Zheng, Weimou Dehal, Paramvir Wang, Jun Durbin, Richard Nucleic Acids Res Article TreeFam is a database of phylogenetic trees of gene families found in animals. It aims to develop a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments. Curated families are being added progressively, based on seed alignments and trees in a similar fashion to Pfam. Release 1.1 of TreeFam contains curated trees for 690 families and automatically generated trees for another 11 646 families. These represent over 128 000 genes from nine fully sequenced animal genomes and over 45 000 other animal proteins from UniProt; ∼40–85% of proteins encoded in the fully sequenced animal genomes are included in TreeFam. TreeFam is freely available at and . Oxford University Press 2006-01-01 2005-12-28 /pmc/articles/PMC1347480/ /pubmed/16381935 http://dx.doi.org/10.1093/nar/gkj118 Text en © The Author 2006. Published by Oxford University Press. All rights reserved |
spellingShingle | Article Li, Heng Coghlan, Avril Ruan, Jue Coin, Lachlan James Hériché, Jean-Karim Osmotherly, Lara Li, Ruiqiang Liu, Tao Zhang, Zhang Bolund, Lars Wong, Gane Ka-Shu Zheng, Weimou Dehal, Paramvir Wang, Jun Durbin, Richard TreeFam: a curated database of phylogenetic trees of animal gene families |
title | TreeFam: a curated database of phylogenetic trees of animal gene families |
title_full | TreeFam: a curated database of phylogenetic trees of animal gene families |
title_fullStr | TreeFam: a curated database of phylogenetic trees of animal gene families |
title_full_unstemmed | TreeFam: a curated database of phylogenetic trees of animal gene families |
title_short | TreeFam: a curated database of phylogenetic trees of animal gene families |
title_sort | treefam: a curated database of phylogenetic trees of animal gene families |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347480/ https://www.ncbi.nlm.nih.gov/pubmed/16381935 http://dx.doi.org/10.1093/nar/gkj118 |
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