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A supersecondary structure library and search algorithm for modeling loops in protein structures

We present a fragment-search based method for predicting loop conformations in protein models. A hierarchical and multidimensional database has been set up that currently classifies 105 950 loop fragments and loop flanking secondary structures. Besides the length of the loops and types of bracing se...

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Detalles Bibliográficos
Autores principales: Fernandez-Fuentes, Narcis, Oliva, Baldomero, Fiser, András
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2006
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1440879/
https://www.ncbi.nlm.nih.gov/pubmed/16617149
http://dx.doi.org/10.1093/nar/gkl156