Cargando…

"Per cell" normalization method for mRNA measurement by quantitative PCR and microarrays

BACKGROUND: Transcriptome data from quantitative PCR (Q-PCR) and DNA microarrays are typically obtained from a fixed amount of RNA collected per sample. Therefore, variations in tissue cellularity and RNA yield across samples in an experimental series compromise accurate determination of the absolut...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kanno, Jun, Aisaki, Ken-ichi, Igarashi, Katsuhide, Nakatsu, Noriyuki, Ono, Atsushi, Kodama, Yukio, Nagao, Taku
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2006
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1448209/ https://www.ncbi.nlm.nih.gov/pubmed/16571132 http://dx.doi.org/10.1186/1471-2164-7-64

Ejemplares similares

Gene expression response to EWS–FLI1 in mouse embryonic cartilage
por: Tanaka, Miwa, et al.
Publicado: (2014)

Learning and Memory Deficits in Male Adult Mice Treated with a Benzodiazepine Sleep-Inducing Drug during the Juvenile Period
por: Furukawa, Yusuke, et al.
Publicado: (2016)

Evaluation of normalization methods for two-channel microRNA microarrays
por: Zhao, Yingdong, et al.
Publicado: (2010)

Mechanisms of benzene-induced hematotoxicity and leukemogenicity: cDNA microarray analyses using mouse bone marrow tissue.
por: Yoon, Byung-Il, et al.
Publicado: (2003)

Exosome-mediated horizontal gene transfer occurs in double-strand break repair during genome editing
por: Ono, Ryuichi, et al.
Publicado: (2019)

Evaluating different methods of microarray data normalization
por: Fujita, André, et al.
Publicado: (2006)

Selecting normalization genes for small diagnostic microarrays
por: Jaeger, Jochen, et al.
Publicado: (2006)

Can Zipf's law be adapted to normalize microarrays?
por: Lu, Tim, et al.
Publicado: (2005)

The effects of normalization on the correlation structure of microarray data
por: Qiu, Xing, et al.
Publicado: (2005)

Large scale multiplex PCR improves pathogen detection by DNA microarrays
por: Palka-Santini, Maria, et al.
Publicado: (2009)

Identification of microRNA-mRNA modules using microarray data
por: Jayaswal, Vivek, et al.
Publicado: (2011)

Optimized LOWESS normalization parameter selection for DNA microarray data
por: Berger, John A, et al.
Publicado: (2004)

Iterative rank-order normalization of gene expression microarray data
por: Welsh, Eric A, et al.
Publicado: (2013)

Identification of reliable reference genes for quantitative real-time PCR normalization in pitaya
por: Chen, Canbin, et al.
Publicado: (2019)

Rapid identification of bacterial pathogens using a PCR- and microarray-based assay
por: Järvinen, Anna-Kaarina, et al.
Publicado: (2009)

Reference genes for normalization of qPCR assays in sugarcane plants under water deficit
por: de Andrade, Larissa Mara, et al.
Publicado: (2017)

Orthogonal projections to latent structures as a strategy for microarray data normalization
por: Bylesjö, Max, et al.
Publicado: (2007)

Statistical monitoring of weak spots for improvement of normalization and ratio estimates in microarrays
por: Dozmorov, Igor, et al.
Publicado: (2004)

The construction and use of bacterial DNA microarrays based on an optimized two-stage PCR strategy
por: Postier, Bradley L, et al.
Publicado: (2003)

A flexible representation of omic knowledge for thorough analysis of microarray data
por: Hasegawa, Yoshikazu, et al.
Publicado: (2006)

TRIzol treatment of secretory phase endometrium allows combined proteomic and mRNA microarray analysis of the same sample in women with and without endometriosis
por: Fassbender, Amelie, et al.
Publicado: (2010)

Using Generalized Procrustes Analysis (GPA) for normalization of cDNA microarray data
por: Xiong, Huiling, et al.
Publicado: (2008)

Improving the scaling normalization for high-density oligonucleotide GeneChip expression microarrays
por: Lu, Chao
Publicado: (2004)

Two-stage normalization using background intensities in cDNA microarray data
por: Yoon, Dankyu, et al.
Publicado: (2004)

Normal uniform mixture differential gene expression detection for cDNA microarrays
por: Dean, Nema, et al.
Publicado: (2005)

Reproducibility of quantitative RT-PCR array in miRNA expression profiling and comparison with microarray analysis
por: Chen, Yongxin, et al.
Publicado: (2009)

An optimized protocol for microarray validation by quantitative PCR using amplified amino allyl labeled RNA
por: Jeanty, Céline, et al.
Publicado: (2010)

Modeling miRNA-mRNA interactions: fitting chemical kinetics equations to microarray data
por: Luo, Zijun, et al.
Publicado: (2014)

Use of normalization methods for analysis of microarrays containing a high degree of gene effects
por: Ni, Terri T, et al.
Publicado: (2008)

Global rank-invariant set normalization (GRSN) to reduce systematic distortions in microarray data
por: Pelz, Carl R, et al.
Publicado: (2008)

Delineation of amplification, hybridization and location effects in microarray data yields better-quality normalization
por: Hulsman, Marc, et al.
Publicado: (2010)

An integrated hierarchical Bayesian approach to normalizing left-censored microRNA microarray data
por: Kang, Jia, et al.
Publicado: (2013)

TumorBoost: Normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays
por: Bengtsson, Henrik, et al.
Publicado: (2010)

Evaluation of sense-strand mRNA amplification by comparative quantitative PCR
por: Goff, Loyal A, et al.
Publicado: (2004)

Selection of optimal reference genes for normalization in quantitative RT-PCR
por: Chervoneva, Inna, et al.
Publicado: (2010)

Novel concept microarray enabling PCR and multistep reactions through pipette-free aperture-to-aperture parallel transfer
por: Kinoshita, Yasunori, et al.
Publicado: (2010)

A robust two-way semi-linear model for normalization of cDNA microarray data
por: Wang, Deli, et al.
Publicado: (2005)

Data-driven normalization strategies for high-throughput quantitative RT-PCR
por: Mar, Jessica C, et al.
Publicado: (2009)

Preprocessing differential methylation hybridization microarray data
por: Sun, Shuying, et al.
Publicado: (2011)

An alternative high output tissue microarray technique
por: Shi, Yuan, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_2tfqru5q7t6tdq8ckrmo6i223t