Fast index based algorithms and software for matching position specific scoring matrices

BACKGROUND: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences. Searching with PSSMs in complete genomes or large sequence databases is a common, but computationally expensive task. RE...

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Detalles Bibliográficos
Autores principales: Beckstette, Michael, Homann, Robert, Giegerich, Robert, Kurtz, Stefan
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2006
Materias:
Methodology Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1635428/
https://www.ncbi.nlm.nih.gov/pubmed/16930469
http://dx.doi.org/10.1186/1471-2105-7-389

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1635428/
https://www.ncbi.nlm.nih.gov/pubmed/16930469
http://dx.doi.org/10.1186/1471-2105-7-389

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