Cargando…

Comparison of type I error for multiple test corrections in large single-nucleotide polymorphism studies using principal components versus haplotype blocking algorithms

Although permutation testing has been the gold standard for assessing significance levels in studies using multiple markers, it is time-consuming. A Bonferroni correction to the nominal p-value that uses the underlying pair-wise linkage disequilibrium (LD) structure among the markers to determine th...

Descripción completa

Detalles Bibliográficos
Autores principales:	Nicodemus, Kristin K, Liu, Wenlei, Chase, Gary A, Tsai, Ya-Yu, Fallin, M Daniele
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2005
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1866703/ https://www.ncbi.nlm.nih.gov/pubmed/16451692 http://dx.doi.org/10.1186/1471-2156-6-S1-S78

Ejemplares similares

Testing for associations between systolic blood pressure and single-nucleotide polymorphism profiles obtained from sparse principal component analysis
por: Bonner, Ashley, et al.
Publicado: (2014)

Use of susceptibility scoring in conjunction with the genotypic transmission disequilibrium test
por: Benke, Kelly S, et al.
Publicado: (2005)

Exploring pleiotropy using principal components
por: Bensen, Jeannette T, et al.
Publicado: (2003)

Stability of variable importance scores and rankings using statistical learning tools on single-nucleotide polymorphisms and risk factors involved in gene × gene and gene × environment interactions
por: Nicodemus, Kristin K, et al.
Publicado: (2007)

Principal-component-based population structure adjustment in the North American Rheumatoid Arthritis Consortium data: impact of single-nucleotide polymorphism set and analysis method
por: Peloso, Gina M, et al.
Publicado: (2009)

Association tests based on the principal-component analysis
por: Oh, Sohee, et al.
Publicado: (2007)

Microsatellite linkage analysis, single-nucleotide polymorphisms, and haplotype associations with ECB21 in the COGA data
por: Kraja, Aldi T, et al.
Publicado: (2005)

Linkage and association analyses of principal components in expression data
por: Hinrichs, Anthony L, et al.
Publicado: (2007)

Identification of gene-gene interaction using principal components
por: Li, Jia, et al.
Publicado: (2009)

Linkage analysis using principal components of gene expression data
por: Atkinson, Elizabeth J, et al.
Publicado: (2007)

A fast and accurate algorithm for single individual haplotyping
por: Xie, Minzhu, et al.
Publicado: (2012)

Principal components ancestry adjustment for Genetic Analysis Workshop 17 data
por: Jin, Jing, et al.
Publicado: (2011)

Supervised categorical principal component analysis for genome-wide association analyses
por: Lu, Meng, et al.
Publicado: (2014)

Clustering and principal-components approach based on heritability for mapping multiple gene expressions
por: Wang, Yuanjia, et al.
Publicado: (2007)

Effect of genotyping error in model-free linkage analysis using microsatellite or single-nucleotide polymorphism marker maps
por: Thompson, Cheryl L, et al.
Publicado: (2005)

A linear-time algorithm for reconstructing zero-recombinant haplotype configuration on a pedigree
por: Lai, En-Yu, et al.
Publicado: (2012)

Genome-wide association studies using single-nucleotide polymorphisms versus haplotypes: an empirical comparison with data from the North American Rheumatoid Arthritis Consortium
por: Shim, Heejung, et al.
Publicado: (2009)

Association analyses of the MAS-QTL data set using grammar, principal components and Bayesian network methodologies
por: Karacaören, Burak, et al.
Publicado: (2011)

Bivariate genome scans incorporating factor and principal component analyses to identify common genetic components of alcoholism, event-related potential, and electroencephalogram phenotypes
por: Lin, Jing-Ping, et al.
Publicado: (2005)

Different models and single-nucleotide polymorphisms signal the simulated weak gene-gene interaction for a quantitative trait using haplotype-based and mixed models testing
por: Kovac, Ilija P, et al.
Publicado: (2009)

A comparison in association and linkage genome-wide scans for alcoholism susceptibility genes using single-nucleotide polymorphisms
por: Chiu, Yen-Feng, et al.
Publicado: (2005)

Influence of control selection in genome-wide association studies: the example of diabetes in the Framingham Heart Study
por: Fradin, Delphine D, et al.
Publicado: (2009)

Stable Tensor Principal Component Pursuit: Error Bounds and Efficient Algorithms
por: Fang, Wei, et al.
Publicado: (2019)

Use of principal components to aggregate rare variants in case-control and family-based association studies in the presence of multiple covariates
por: Kazma, Rémi, et al.
Publicado: (2011)

A principal-components-based clustering method to identify multiple variants associated with rheumatoid arthritis and arthritis-related autoantibodies
por: Black, Mary Helen, et al.
Publicado: (2009)

SEM-EDS investigation on PM10 data collected in Central Italy: Principal Component Analysis and Hierarchical Cluster Analysis
por: Genga, Alessandra, et al.
Publicado: (2012)

Prediction of protein-protein interactions from amino acid sequences with ensemble extreme learning machines and principal component analysis
por: You, Zhu-Hong, et al.
Publicado: (2013)

Haplotypic structure of the X chromosome in the COGA population sample and the quality of its reconstruction by extant software packages
por: Marroni, Fabio, et al.
Publicado: (2005)

Identification of tag single-nucleotide polymorphisms in regions with varying linkage disequilibrium
por: Duggal, Priya, et al.
Publicado: (2005)

Comparison of measures for haplotype similarity
por: Marquard, Vivien, et al.
Publicado: (2007)

Potts model for haplotype associations
por: Moltchanova, Elena V, et al.
Publicado: (2005)

Haplotype block partitioning as a tool for dimensionality reduction in SNP association studies
por: Pattaro, Cristian, et al.
Publicado: (2008)

Combining least absolute shrinkage and selection operator (LASSO) and principal-components analysis for detection of gene-gene interactions in genome-wide association studies
por: D'Angelo, Gina M, et al.
Publicado: (2009)

Comparison of methods for correcting population stratification in a genome-wide association study of rheumatoid arthritis: principal-component analysis versus multidimensional scaling
por: Wang, Dai, et al.
Publicado: (2009)

Algorithms: simultaneous error-correction and rooting for gene tree reconciliation and the gene duplication problem
por: Górecki, Pawel, et al.
Publicado: (2012)

Robust testing of haplotype/disease association
por: Allen, Andrew S, et al.
Publicado: (2005)

Haplotyping via minimum recombinant paradigm
por: Hernández-Sánchez, Jules, et al.
Publicado: (2009)

Haplotype approach for association analysis on hypertension
por: Shen, Xiaowei, et al.
Publicado: (2014)

Picking single-nucleotide polymorphisms in forests
por: Schwarz, Daniel F, et al.
Publicado: (2007)

A quantitatively-modeled homozygosity mapping algorithm, qHomozygosityMapping, utilizing whole genome single nucleotide polymorphism genotyping data
por: Huqun*, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_u94qk497prad7s1lt4jd6h2a93