Cargando…

Critical values and variation in type I error along chromosomes in the COGA dataset using the applied pseudo-trait method

BACKGROUND: By analyzing a "pseudo-trait," a trait not linked or associated with any of the markers tested, the distribution of the test statistic under the null hypothesis can provide the critical value for the appropriate percentile of the distribution. In addition, the anecdotal observa...

Descripción completa

Detalles Bibliográficos
Autores principales:	Papanicolaou, George J, Justice, Cristina M, Kovac, Illija M, Sorant, Alexa JM, Wilson, Alexander F
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2005
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1866729/ https://www.ncbi.nlm.nih.gov/pubmed/16451666 http://dx.doi.org/10.1186/1471-2156-6-S1-S54

Ejemplares similares

Comparison of linkage and association strategies for quantitative traits using the COGA dataset
por: McQueen, Matthew B, et al.
Publicado: (2005)

COGA phenotypes and linkages on chromosome 2
por: Wiener, Howard W, et al.
Publicado: (2005)

Simulation-based homozygosity mapping with the GAW14 COGA dataset on alcoholism
por: Libiger, Ondrej, et al.
Publicado: (2005)

Type I error rates of rare single nucleotide variants are inflated in tests of association with non–normally distributed traits using simple linear regression methods
por: Schwantes-An, Tae-Hwi, et al.
Publicado: (2016)

Haplotypic structure of the X chromosome in the COGA population sample and the quality of its reconstruction by extant software packages
por: Marroni, Fabio, et al.
Publicado: (2005)

An exploration of sex-specific linkage disequilibrium on chromosome X in Caucasians from the COGA study
por: Cox, Miranda E, et al.
Publicado: (2005)

Recursive partitioning models for linkage in COGA data
por: Xu, Wei, et al.
Publicado: (2005)

A variance component analysis on recombination rate in the COGA pedigrees
por: Wang, Lin, et al.
Publicado: (2005)

Two novel quantitative trait linkage analysis statistics based on the posterior probability of linkage: application to the COGA families
por: Bartlett, Christopher W, et al.
Publicado: (2005)

Multivariate linkage analysis using the electrophysiological phenotypes in the COGA alcoholism data
por: Zhang, Heping, et al.
Publicado: (2005)

A genome-wide linkage and association study using COGA data
por: Zhu, Xiaofeng, et al.
Publicado: (2005)

A genome-wide scanning and fine mapping study of COGA data
por: Yang, Hsin-Chou, et al.
Publicado: (2005)

Analysis of alcohol dependence phenotype in the COGA families using covariates to detect linkage
por: Reck, Brian H, et al.
Publicado: (2005)

Comparison of genotype- and haplotype-based approaches for fine-mapping of alcohol dependence using COGA data
por: Pinnaduwage, Dushanthi, et al.
Publicado: (2005)

Multilocus and interaction-based genome scan for alcoholism risk factors in Caucasian Americans: the COGA study
por: Williams, Adrienne H, et al.
Publicado: (2005)

Linkage analysis and association analysis in the presence of linkage using age at onset of COGA alcoholism data
por: Zhong, Xiaoyun, et al.
Publicado: (2005)

Microsatellite linkage analysis, single-nucleotide polymorphisms, and haplotype associations with ECB21 in the COGA data
por: Kraja, Aldi T, et al.
Publicado: (2005)

Characteristics of replicated single-nucleotide polymorphism genotypes from COGA: Affymetrix and Center for Inherited Disease Research
por: Tintle, Nathan L, et al.
Publicado: (2005)

Application of the regression of offspring on mid-parent method to detect associations between single-nucleotide polymorphisms and the beta 2 electroencephalogram phenotype in the COGA data
por: Roy-Gagnon, Marie-Hélène, et al.
Publicado: (2005)

A comparison of discrete versus continuous environment in a variance components-based linkage analysis of the COGA data
por: Viel, Kevin R, et al.
Publicado: (2005)

Comparison of marker types and map assumptions using Markov chain Monte Carlo-based linkage analysis of COGA data
por: Sieh, Weiva, et al.
Publicado: (2005)

Description of the data from the Collaborative Study on the Genetics of Alcoholism (COGA) and single-nucleotide polymorphism genotyping for Genetic Analysis Workshop 14
por: Edenberg, Howard J, et al.
Publicado: (2005)

Comparison of results from tests of association in unrelated individuals with uncollapsed and collapsed sequence variants using tiled regression
por: Sung, Heejong, et al.
Publicado: (2011)

Allele frequency misspecification: effect on power and Type I error of model-dependent linkage analysis of quantitative traits under random ascertainment
por: Mandal, Diptasri M, et al.
Publicado: (2006)

Importance sampling method of correction for multiple testing in affected sib-pair linkage analysis
por: Klein, Alison P, et al.
Publicado: (2003)

Partial least square regression applied to the QTLMAS 2010 dataset
por: Coster, Albart, et al.
Publicado: (2011)

Applying different genomic evaluation approaches on QTLMAS2010 dataset
por: Nadaf, Javad, et al.
Publicado: (2011)

Non-redundant summary scores applied to the North American Rheumatoid Arthritis Consortium dataset
por: Pankratz, Nathan D
Publicado: (2009)

Comparison of year-of-exam- and age-matched estimates of heritability in the Framingham Heart Study data
por: Mathias, Rasika A, et al.
Publicado: (2003)

Local false discovery rate and minimum total error rate approaches to identifying interesting chromosomal regions
por: Sinha, Ritwik, et al.
Publicado: (2005)

A Prospective Comparison of Bipolar I and II Subjects With and Without Comorbid Alcohol Dependence From the COGA Dataset
por: Preuss, Ulrich W., et al.
Publicado: (2020)

Old lessons learned anew: family-based methods for detecting genes responsible for quantitative and qualitative traits in the Genetic Analysis Workshop 17 mini-exome sequence data
por: Simpson, Claire L, et al.
Publicado: (2011)

Linkage mapping of a complex trait in the New York population of the GAW14 simulated dataset: a multivariate phenotype approach
por: Ghosh, Saurabh, et al.
Publicado: (2005)

Different models and single-nucleotide polymorphisms signal the simulated weak gene-gene interaction for a quantitative trait using haplotype-based and mixed models testing
por: Kovac, Ilija P, et al.
Publicado: (2009)

A Prospective Comparison of Bipolar I and II Subjects with and without Comorbid Cannabis Use Disorders from the COGA Dataset
por: Preuss, Ulrich W., et al.
Publicado: (2023)

QTLMAS 2009: simulated dataset
por: Coster, Albart, et al.
Publicado: (2010)

QTLMAS 2010: simulated dataset
por: Szydlowski, Maciej, et al.
Publicado: (2011)

Discovering motifs that induce sequencing errors
por: Allhoff, Manuel, et al.
Publicado: (2013)

XV(th )QTLMAS: simulated dataset
por: Elsen, Jean-Michel, et al.
Publicado: (2012)

Finding genes that influence quantitative traits with tree-based clustering
por: Wilson, Ian J, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_haquidnfvbi6ecr0upti8lot11