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Indexing Strategies for Rapid Searches of Short Words in Genome Sequences
Searching for matches between large collections of short (14–30 nucleotides) words and sequence databases comprising full genomes or transcriptomes is a common task in biological sequence analysis. We investigated the performance of simple indexing strategies for handling such tasks and developed tw...
| Autores principales: | , , , |
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| Formato: | Texto |
| Lenguaje: | English |
| Publicado: |
Public Library of Science
2007
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1894650/ https://www.ncbi.nlm.nih.gov/pubmed/17593978 http://dx.doi.org/10.1371/journal.pone.0000579 |