Cargando…

Characterization of the sequence specificity of the R1Bm endonuclease domain by structural and biochemical studies

R1Bm is a long interspersed element (LINE) inserted into a specific sequence within 28S rDNA of the silkworm genome. Of two open reading frames (ORFs) of R1Bm, ORF2 encodes a reverse transcriptase (RT) and an endonuclease (EN) domain which digests specifically both top and bottom strand of the targe...

Descripción completa

Detalles Bibliográficos
Autores principales:	Maita, Nobuo, Aoyagi, Hideyuki, Osanai, Mizuko, Shirakawa, Masahiro, Fujiwara, Haruhiko
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2007
Materias:	Molecular Biology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1919474/ https://www.ncbi.nlm.nih.gov/pubmed/17537809 http://dx.doi.org/10.1093/nar/gkm397

Ejemplares similares

Functional roles of 3′-terminal structures of template RNA during in vivo retrotransposition of non-LTR retrotransposon, R1Bm
por: Anzai, Tomohiro, et al.
Publicado: (2005)

Creation of a novel telomere-cutting endonuclease based on the EN domain of telomere-specific non-long terminal repeat retrotransposon, TRAS1
por: Yoshitake, Kazutoshi, et al.
Publicado: (2010)

Endonuclease domain of non-LTR retrotransposons: loss-of-function mutants and modeling of the R2Bm endonuclease
por: Govindaraju, Aruna, et al.
Publicado: (2016)

Flap endonuclease Rad27 cleaves the RNA of R-loop structures to suppress telomere recombination
por: Liu, Chia-Chun, et al.
Publicado: (2023)

Substrate Generation for Endonucleases of CRISPR/Cas Systems
por: Zoephel, Judith, et al.
Publicado: (2012)

The N-terminal PIN domain of the exosome subunit Rrp44 harbors endonuclease activity and tethers Rrp44 to the yeast core exosome
por: Schneider, Claudia, et al.
Publicado: (2009)

The human PMR1 endonuclease stimulates cell motility by down regulating miR-200 family microRNAs
por: Gu, Shan-Qing, et al.
Publicado: (2016)

Homing endonuclease mediated gene targeting in Anopheles gambiae cells and embryos
por: Windbichler, Nikolai, et al.
Publicado: (2007)

Biochemical analysis of the N-terminal domain of human RAD54B
por: Sarai, Naoyuki, et al.
Publicado: (2008)

The ERCC1/XPF endonuclease is required for efficient single-strand annealing and gene conversion in mammalian cells
por: Al-Minawi, Ali Z., et al.
Publicado: (2008)

Ubiquitination of human AP-endonuclease 1 (APE1) enhanced by T233E substitution and by CDK5
por: Busso, Carlos S., et al.
Publicado: (2011)

Cells with stochastically increased methyltransferase to restriction endonuclease ratio provide an entry for bacteriophage into protected cell population
por: Kirillov, Alexander, et al.
Publicado: (2022)

Temporal dynamics of methyltransferase and restriction endonuclease accumulation in individual cells after introducing a restriction-modification system
por: Morozova, Natalia, et al.
Publicado: (2016)

Activation of the mismatch-specific endonuclease EndoMS/NucS by the replication clamp is required for high fidelity DNA replication
por: Ishino, Sonoko, et al.
Publicado: (2018)

Unconventional GIY-YIG homing endonuclease encoded in group I introns in closely related strains of the Bacillus cereus group
por: Nord, David, et al.
Publicado: (2008)

Regulation of the human AP-endonuclease (APE1/Ref-1) expression by the tumor suppressor p53 in response to DNA damage
por: Zaky, Amira, et al.
Publicado: (2008)

Apn1 and Apn2 endonucleases prevent accumulation of repair-associated DNA breaks in budding yeast as revealed by direct chromosomal analysis
por: Ma, Wenjian, et al.
Publicado: (2008)

Distinct roles of XRCC4 and Ku80 in non-homologous end-joining of endonuclease- and ionizing radiation-induced DNA double-strand breaks
por: Schulte-Uentrop, Leonie, et al.
Publicado: (2008)

Identification of residues in the N-terminal PAS domains important for dimerization of Arnt and AhR
por: Hao, Nan, et al.
Publicado: (2011)

Specific sequences within arginine–glycine-rich domains affect mRNA-binding protein function
por: McBride, Anne E., et al.
Publicado: (2009)

The tenacious recognition of yeast telomere sequence by Cdc13 is fully exerted by a single OB-fold domain
por: Lewis, Karen A., et al.
Publicado: (2014)

Altered biochemical specificity of G-quadruplexes with mutated tetrads
por: Švehlová, Kateřina, et al.
Publicado: (2016)

Structural basis for sequence-dependent DNA cleavage by nonspecific endonucleases
por: Wang, Yi-Ting, et al.
Publicado: (2007)

Biochemical and cellular characteristics of the 3′ → 5′ exonuclease TREX2
por: Chen, Ming-Jiu, et al.
Publicado: (2007)

Biochemical reconstitution of abasic DNA lesion replication in Xenopus extracts
por: Liao, Shuren, et al.
Publicado: (2007)

The recognition domain of the methyl-specific endonuclease McrBC flips out 5-methylcytosine
por: Sukackaite, Rasa, et al.
Publicado: (2012)

Cooperative binding of the yeast Spt10p activator to the histone upstream activating sequences is mediated through an N-terminal dimerization domain
por: Mendiratta, Geetu, et al.
Publicado: (2007)

Structural Basis for the Propagation of Homing Endonuclease-Associated Inteins
por: Beyer, Hannes M., et al.
Publicado: (2022)

Efficient Nucleic Acid Extraction and 16S rRNA Gene Sequencing for Bacterial Community Characterization
por: Anahtar, Melis N., et al.
Publicado: (2016)

Essential factors involved in the precise targeting and insertion of telomere-specific non-LTR retrotransposon, SART1Bm
por: Nichuguti, Narisu, et al.
Publicado: (2020)

The Delta intracellular domain mediates TGF-β/Activin signaling through binding to Smads and has an important bi-directional function in the Notch–Delta signaling pathway
por: Hiratochi, Masahiro, et al.
Publicado: (2007)

The expression of Rpb10, a small subunit common to RNA polymerases, is modulated by the R3H domain-containing Rbs1 protein and the Upf1 helicase
por: Cieśla, Małgorzata, et al.
Publicado: (2020)

Identification of insertion hot spots for non-LTR retrotransposons: computational and biochemical application to Entamoeba histolytica
por: Mandal, Prabhat K., et al.
Publicado: (2006)

Genetic and Biochemical Approaches for In Vivo and In Vitro Assessment of Protein Oligomerization: The Ryanodine Receptor Case Study
por: Stanczyk, Paulina J., et al.
Publicado: (2016)

Structural dissection of sequence recognition and catalytic mechanism of human LINE-1 endonuclease
por: Miller, Ian, et al.
Publicado: (2021)

The amino terminal domain from Mrt4 protein can functionally replace the RNA binding domain of the ribosomal P0 protein
por: Rodríguez-Mateos, María, et al.
Publicado: (2009)

R.KpnI, an HNH superfamily REase, exhibits differential discrimination at non-canonical sequences in the presence of Ca(2+) and Mg(2+)
por: Saravanan, Matheshwaran, et al.
Publicado: (2007)

p160/SRC/NCoA coactivators form complexes via specific interaction of their PAS-B domain with the CID/AD1 domain
por: Lodrini, Marco, et al.
Publicado: (2008)

Genomewide and biochemical analyses of DNA-binding activity of Cdc6/Orc1 and Mcm proteins in Pyrococcus sp.
por: Matsunaga, Fujihiko, et al.
Publicado: (2007)

Strong transcription blockage mediated by R-loop formation within a G-rich homopurine–homopyrimidine sequence localized in the vicinity of the promoter
por: Belotserkovskii, Boris P., et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_1gu653vu3f4qpvb7ahtegespj1