AAindex: amino acid index database, progress report 2008

AAindex is a database of numerical indices representing various physicochemical and biochemical properties of amino acids and pairs of amino acids. We have added a collection of protein contact potentials to the AAindex as a new section. Accordingly AAindex consists of three sections now: AAindex1 f...

Descripción completa

Detalles Bibliográficos
Autores principales: Kawashima, Shuichi, Pokarowski, Piotr, Pokarowska, Maria, Kolinski, Andrzej, Katayama, Toshiaki, Kanehisa, Minoru
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238890/
https://www.ncbi.nlm.nih.gov/pubmed/17998252
http://dx.doi.org/10.1093/nar/gkm998
_version_ 1782150484001292288
author Kawashima, Shuichi
Pokarowski, Piotr
Pokarowska, Maria
Kolinski, Andrzej
Katayama, Toshiaki
Kanehisa, Minoru
author_facet Kawashima, Shuichi
Pokarowski, Piotr
Pokarowska, Maria
Kolinski, Andrzej
Katayama, Toshiaki
Kanehisa, Minoru
author_sort Kawashima, Shuichi
collection PubMed
description AAindex is a database of numerical indices representing various physicochemical and biochemical properties of amino acids and pairs of amino acids. We have added a collection of protein contact potentials to the AAindex as a new section. Accordingly AAindex consists of three sections now: AAindex1 for the amino acid index of 20 numerical values, AAindex2 for the amino acid substitution matrix and AAindex3 for the statistical protein contact potentials. All data are derived from published literature. The database can be accessed through the DBGET/LinkDB system at GenomeNet (http://www.genome.jp/dbget-bin/www_bfind?aaindex) or downloaded by anonymous FTP (ftp://ftp.genome.jp/pub/db/community/aaindex/).
format Text
id pubmed-2238890
institution National Center for Biotechnology Information
language English
publishDate 2008
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-22388902008-02-12 AAindex: amino acid index database, progress report 2008 Kawashima, Shuichi Pokarowski, Piotr Pokarowska, Maria Kolinski, Andrzej Katayama, Toshiaki Kanehisa, Minoru Nucleic Acids Res Articles AAindex is a database of numerical indices representing various physicochemical and biochemical properties of amino acids and pairs of amino acids. We have added a collection of protein contact potentials to the AAindex as a new section. Accordingly AAindex consists of three sections now: AAindex1 for the amino acid index of 20 numerical values, AAindex2 for the amino acid substitution matrix and AAindex3 for the statistical protein contact potentials. All data are derived from published literature. The database can be accessed through the DBGET/LinkDB system at GenomeNet (http://www.genome.jp/dbget-bin/www_bfind?aaindex) or downloaded by anonymous FTP (ftp://ftp.genome.jp/pub/db/community/aaindex/). Oxford University Press 2008-01 2007-11-12 /pmc/articles/PMC2238890/ /pubmed/17998252 http://dx.doi.org/10.1093/nar/gkm998 Text en © 2007 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Kawashima, Shuichi
Pokarowski, Piotr
Pokarowska, Maria
Kolinski, Andrzej
Katayama, Toshiaki
Kanehisa, Minoru
AAindex: amino acid index database, progress report 2008
title AAindex: amino acid index database, progress report 2008
title_full AAindex: amino acid index database, progress report 2008
title_fullStr AAindex: amino acid index database, progress report 2008
title_full_unstemmed AAindex: amino acid index database, progress report 2008
title_short AAindex: amino acid index database, progress report 2008
title_sort aaindex: amino acid index database, progress report 2008
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238890/
https://www.ncbi.nlm.nih.gov/pubmed/17998252
http://dx.doi.org/10.1093/nar/gkm998
work_keys_str_mv AT kawashimashuichi aaindexaminoacidindexdatabaseprogressreport2008
AT pokarowskipiotr aaindexaminoacidindexdatabaseprogressreport2008
AT pokarowskamaria aaindexaminoacidindexdatabaseprogressreport2008
AT kolinskiandrzej aaindexaminoacidindexdatabaseprogressreport2008
AT katayamatoshiaki aaindexaminoacidindexdatabaseprogressreport2008
AT kanehisaminoru aaindexaminoacidindexdatabaseprogressreport2008

Ejemplares similares