CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment

BACKGROUND: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more than 25 years. It is based on a dynamic programming approach that explores all the possible alignments between two sequenc...

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Detalles Bibliográficos
Autores principales: Manavski, Svetlin A, Valle, Giorgio
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2008
Materias:
Research
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2323659/
https://www.ncbi.nlm.nih.gov/pubmed/18387198
http://dx.doi.org/10.1186/1471-2105-9-S2-S10

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2323659/
https://www.ncbi.nlm.nih.gov/pubmed/18387198
http://dx.doi.org/10.1186/1471-2105-9-S2-S10

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