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CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
BACKGROUND: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more than 25 years. It is based on a dynamic programming approach that explores all the possible alignments between two sequenc...
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| Formato: | Texto |
| Lenguaje: | English |
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BioMed Central
2008
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2323659/ https://www.ncbi.nlm.nih.gov/pubmed/18387198 http://dx.doi.org/10.1186/1471-2105-9-S2-S10 |