Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research

BACKGROUND: This paper describes techniques for accelerating the performance of the string set matching problem with particular emphasis on applications in computational proteomics. The process of matching peptide sequences against a genome translated in six reading frames is part of a proteogenomic...

Descripción completa

Detalles Bibliográficos
Autores principales: Dandass, Yoginder S, Burgess, Shane C, Lawrence, Mark, Bridges, Susan M
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2008
Materias:
Methodology Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2374783/
https://www.ncbi.nlm.nih.gov/pubmed/18412963
http://dx.doi.org/10.1186/1471-2105-9-197

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2374783/
https://www.ncbi.nlm.nih.gov/pubmed/18412963
http://dx.doi.org/10.1186/1471-2105-9-197

Ejemplares similares