Cargando…
Splign: algorithms for computing spliced alignments with identification of paralogs
BACKGROUND: The computation of accurate alignments of cDNA sequences against a genome is at the foundation of modern genome annotation pipelines. Several factors such as presence of paralogs, small exons, non-consensus splice signals, sequencing errors and polymorphic sites pose recognized difficult...
Autores principales: | Kapustin, Yuri, Souvorov, Alexander, Tatusova, Tatiana, Lipman, David |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2008
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2440734/ https://www.ncbi.nlm.nih.gov/pubmed/18495041 http://dx.doi.org/10.1186/1745-6150-3-20 |
Ejemplares similares
-
The relationship of protein conservation and sequence length
por: Lipman, David J, et al.
Publicado: (2002) -
Cryptic splice sites and split genes
por: Kapustin, Yuri, et al.
Publicado: (2011) -
RNA variant identification discrepancy among splice-aware alignment algorithms
por: Hong, Ji Hyung, et al.
Publicado: (2018) -
SplicedFamAlign: CDS-to-gene spliced alignment and identification of transcript orthology groups
por: Jammali, Safa, et al.
Publicado: (2019) -
SPA: A Probabilistic Algorithm for Spliced Alignment
por: van Nimwegen, Erik, et al.
Publicado: (2006)