Cargando…

How much of protein sequence space has been explored by life on Earth?

We suggest that the vastness of protein sequence space is actually completely explorable during the populating of the Earth by life by considering upper and lower limits for the number of organisms, genome size, mutation rate and the number of functionally distinct classes of amino acids. We conclud...

Descripción completa

Detalles Bibliográficos
Autores principales: Dryden, David T.F, Thomson, Andrew R, White, John H
Formato: Texto
Lenguaje:English
Publicado: The Royal Society 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2459213/
https://www.ncbi.nlm.nih.gov/pubmed/18426772
http://dx.doi.org/10.1098/rsif.2008.0085
_version_ 1782157417167978496
author Dryden, David T.F
Thomson, Andrew R
White, John H
author_facet Dryden, David T.F
Thomson, Andrew R
White, John H
author_sort Dryden, David T.F
collection PubMed
description We suggest that the vastness of protein sequence space is actually completely explorable during the populating of the Earth by life by considering upper and lower limits for the number of organisms, genome size, mutation rate and the number of functionally distinct classes of amino acids. We conclude that rather than life having explored only an infinitesimally small part of sequence space in the last 4 Gyr, it is instead quite plausible for all of functional protein sequence space to have been explored and that furthermore, at the molecular level, there is no role for contingency.
format Text
id pubmed-2459213
institution National Center for Biotechnology Information
language English
publishDate 2008
publisher The Royal Society
record_format MEDLINE/PubMed
spelling pubmed-24592132008-12-29 How much of protein sequence space has been explored by life on Earth? Dryden, David T.F Thomson, Andrew R White, John H J R Soc Interface Report We suggest that the vastness of protein sequence space is actually completely explorable during the populating of the Earth by life by considering upper and lower limits for the number of organisms, genome size, mutation rate and the number of functionally distinct classes of amino acids. We conclude that rather than life having explored only an infinitesimally small part of sequence space in the last 4 Gyr, it is instead quite plausible for all of functional protein sequence space to have been explored and that furthermore, at the molecular level, there is no role for contingency. The Royal Society 2008-04-15 2008-08-06 /pmc/articles/PMC2459213/ /pubmed/18426772 http://dx.doi.org/10.1098/rsif.2008.0085 Text en Copyright © 2008 The Royal Society http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Report
Dryden, David T.F
Thomson, Andrew R
White, John H
How much of protein sequence space has been explored by life on Earth?
title How much of protein sequence space has been explored by life on Earth?
title_full How much of protein sequence space has been explored by life on Earth?
title_fullStr How much of protein sequence space has been explored by life on Earth?
title_full_unstemmed How much of protein sequence space has been explored by life on Earth?
title_short How much of protein sequence space has been explored by life on Earth?
title_sort how much of protein sequence space has been explored by life on earth?
topic Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2459213/
https://www.ncbi.nlm.nih.gov/pubmed/18426772
http://dx.doi.org/10.1098/rsif.2008.0085
work_keys_str_mv AT drydendavidtf howmuchofproteinsequencespacehasbeenexploredbylifeonearth
AT thomsonandrewr howmuchofproteinsequencespacehasbeenexploredbylifeonearth
AT whitejohnh howmuchofproteinsequencespacehasbeenexploredbylifeonearth