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How much of protein sequence space has been explored by life on Earth?
We suggest that the vastness of protein sequence space is actually completely explorable during the populating of the Earth by life by considering upper and lower limits for the number of organisms, genome size, mutation rate and the number of functionally distinct classes of amino acids. We conclud...
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Formato: | Texto |
Lenguaje: | English |
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The Royal Society
2008
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2459213/ https://www.ncbi.nlm.nih.gov/pubmed/18426772 http://dx.doi.org/10.1098/rsif.2008.0085 |
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author | Dryden, David T.F Thomson, Andrew R White, John H |
author_facet | Dryden, David T.F Thomson, Andrew R White, John H |
author_sort | Dryden, David T.F |
collection | PubMed |
description | We suggest that the vastness of protein sequence space is actually completely explorable during the populating of the Earth by life by considering upper and lower limits for the number of organisms, genome size, mutation rate and the number of functionally distinct classes of amino acids. We conclude that rather than life having explored only an infinitesimally small part of sequence space in the last 4 Gyr, it is instead quite plausible for all of functional protein sequence space to have been explored and that furthermore, at the molecular level, there is no role for contingency. |
format | Text |
id | pubmed-2459213 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2008 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-24592132008-12-29 How much of protein sequence space has been explored by life on Earth? Dryden, David T.F Thomson, Andrew R White, John H J R Soc Interface Report We suggest that the vastness of protein sequence space is actually completely explorable during the populating of the Earth by life by considering upper and lower limits for the number of organisms, genome size, mutation rate and the number of functionally distinct classes of amino acids. We conclude that rather than life having explored only an infinitesimally small part of sequence space in the last 4 Gyr, it is instead quite plausible for all of functional protein sequence space to have been explored and that furthermore, at the molecular level, there is no role for contingency. The Royal Society 2008-04-15 2008-08-06 /pmc/articles/PMC2459213/ /pubmed/18426772 http://dx.doi.org/10.1098/rsif.2008.0085 Text en Copyright © 2008 The Royal Society http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Report Dryden, David T.F Thomson, Andrew R White, John H How much of protein sequence space has been explored by life on Earth? |
title | How much of protein sequence space has been explored by life on Earth? |
title_full | How much of protein sequence space has been explored by life on Earth? |
title_fullStr | How much of protein sequence space has been explored by life on Earth? |
title_full_unstemmed | How much of protein sequence space has been explored by life on Earth? |
title_short | How much of protein sequence space has been explored by life on Earth? |
title_sort | how much of protein sequence space has been explored by life on earth? |
topic | Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2459213/ https://www.ncbi.nlm.nih.gov/pubmed/18426772 http://dx.doi.org/10.1098/rsif.2008.0085 |
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