RNAslider: a faster engine for consecutive windows folding and its application to the analysis of genomic folding asymmetry

BACKGROUND: Scanning large genomes with a sliding window in search of locally stable RNA structures is a well motivated problem in bioinformatics. Given a predefined window size L and an RNA sequence S of size N (L < N), the consecutive windows folding problem is to compute the minimal free energ...

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Detalles Bibliográficos
Autores principales: Horesh, Yair, Wexler, Ydo, Lebenthal, Ilana, Ziv-Ukelson, Michal, Unger, Ron
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2009
Materias:
Methodology Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2682796/
https://www.ncbi.nlm.nih.gov/pubmed/19257906
http://dx.doi.org/10.1186/1471-2105-10-76

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2682796/
https://www.ncbi.nlm.nih.gov/pubmed/19257906
http://dx.doi.org/10.1186/1471-2105-10-76

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