Cargando…

Accounting for uncertainty when assessing association between copy number and disease: a latent class model

BACKGROUND: Copy number variations (CNVs) may play an important role in disease risk by altering dosage of genes and other regulatory elements, which may have functional and, ultimately, phenotypic consequences. Therefore, determining whether a CNV is associated or not with a given disease might be...

Descripción completa

Detalles Bibliográficos
Autores principales:	González, Juan R, Subirana, Isaac, Escaramís, Geòrgia, Peraza, Solymar, Cáceres, Alejandro, Estivill, Xavier, Armengol, Lluís
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2009
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2707368/ https://www.ncbi.nlm.nih.gov/pubmed/19500389 http://dx.doi.org/10.1186/1471-2105-10-172

Ejemplares similares

Probe-specific mixed-model approach to detect copy number differences using multiplex ligation-dependent probe amplification (MLPA)
por: González, Juan R, et al.
Publicado: (2008)

Copy Number Variants and Common Disorders: Filling the Gaps and Exploring Complexity in Genome-Wide Association Studies
por: Estivill, Xavier, et al.
Publicado: (2007)

Identification of Copy Number Variants Defining Genomic Differences among Major Human Groups
por: Armengol, Lluís, et al.
Publicado: (2009)

MLPAstats: An R GUI package for the integrated analysis of copy number alterations using MLPA data
por: Cáceres, Alejandro, et al.
Publicado: (2011)

hsegHMM: hidden Markov model-based allele-specific copy number alteration analysis accounting for hypersegmentation
por: Choo-Wosoba, Hyoyoung, et al.
Publicado: (2018)

Development of copy number assays for detection and surveillance of piperaquine resistance associated plasmepsin 2/3 copy number variation in Plasmodium falciparum
por: Ansbro, Megan R., et al.
Publicado: (2020)

Copy number variation analysis based on AluScan sequences
por: Yang, Jian-Feng, et al.
Publicado: (2014)

Identification of Medium-Sized Copy Number Alterations in Whole-Genome Sequencing
por: Ozer, Hatice Gulcin, et al.
Publicado: (2015)

Noise cancellation using total variation for copy number variation detection
por: Zare, Fatima, et al.
Publicado: (2018)

Accounting for 16S rRNA copy number prediction uncertainty and its implications in bacterial diversity analyses
por: Gao, Yingnan, et al.
Publicado: (2023)

Improved Statistical Analysis for Array CGH-Based DNA Copy Number Aberrations
por: Jiang, Hongmei, et al.
Publicado: (2011)

Reliable transgene-independent method for determining Sleeping Beauty transposon copy numbers
por: Kolacsek, Orsolya, et al.
Publicado: (2011)

Accounting for location uncertainty in azimuthal telemetry data improves ecological inference
por: Gerber, Brian D., et al.
Publicado: (2018)

CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction
por: Angly, Florent E, et al.
Publicado: (2014)

A Novel Graph-based Algorithm to Infer Recurrent Copy Number Variations in Cancer
por: Chi, Chen, et al.
Publicado: (2016)

CINdex: A Bioconductor Package for Analysis of Chromosome Instability in DNA Copy Number Data
por: Song, Lei, et al.
Publicado: (2017)

Copy number variation signature to predict human ancestry
por: Pronold, Melissa, et al.
Publicado: (2012)

Inferring copy number and genotype in tumour exome data
por: Amarasinghe, Kaushalya C, et al.
Publicado: (2014)

Copy number variation genotyping using family information
por: Chu, Jen-hwa, et al.
Publicado: (2013)

RefCNV: Identification of Gene-Based Copy Number Variants Using Whole Exome Sequencing
por: Chang, Lun-Ching, et al.
Publicado: (2016)

Epidermal Growth Factor (EGFR) copy number aberrations in esophageal and gastro-esophageal junctional carcinoma
por: Dahle-Smith, Åsa, et al.
Publicado: (2015)

Normalization of array-CGH data: influence of copy number imbalances
por: Staaf, Johan, et al.
Publicado: (2007)

Inference of chromosome-specific copy numbers using population haplotypes
por: Huang, Yao-Ting, et al.
Publicado: (2011)

Reconstructing DNA copy number by joint segmentation of multiple sequences
por: Zhang, Zhongyang, et al.
Publicado: (2012)

Effective normalization for copy number variation in Hi-C data
por: Servant, Nicolas, et al.
Publicado: (2018)

Day time, night time, over time: geographic and temporal uncertainty when linking event and contextual data
por: Folch, David C., et al.
Publicado: (2021)

Copy number of latent viruses, oncogenicity, and the microcompetition model
por: Polansky, Hanan, et al.
Publicado: (2018)

Normalization using ploidy and genomic DNA copy number allows absolute quantification of transcripts, proteins and metabolites in cells
por: Shimada, Hiroshi, et al.
Publicado: (2010)

Quadruplex MAPH: improvement of throughput in high-resolution copy number screening
por: Tyson, Jess, et al.
Publicado: (2009)

Bayesian model to detect phenotype-specific genes for copy number data
por: González, Juan R, et al.
Publicado: (2012)

Simple binary segmentation frameworks for identifying variation in DNA copy number
por: Yang, Tae Young
Publicado: (2012)

VEGAWES: variational segmentation on whole exome sequencing for copy number detection
por: Anjum, Samreen, et al.
Publicado: (2015)

A comparison of genomic copy number calls by Partek Genomics Suite, Genotyping Console and Birdsuite algorithms to quantitative PCR
por: Grayson, Britney L, et al.
Publicado: (2011)

Using expression arrays for copy number detection: an example from E. coli
por: Skvortsov, Dmitriy, et al.
Publicado: (2007)

Fast MCMC sampling for hidden markov models to determine copy number variations
por: Mahmud, Md Pavel, et al.
Publicado: (2011)

DBS: a fast and informative segmentation algorithm for DNA copy number analysis
por: Ruan, Jun, et al.
Publicado: (2019)

CNV Radar: an improved method for somatic copy number alteration characterization in oncology
por: Soong, David, et al.
Publicado: (2020)

MCKAT: a multi-dimensional copy number variant kernel association test
por: Maus Esfahani, Nastaran, et al.
Publicado: (2021)

In silico molecular cytogenetics: a bioinformatic approach to prioritization of candidate genes and copy number variations for basic and clinical genome research
por: Iourov, Ivan Y, et al.
Publicado: (2014)

IMPLANT: a new technique for transgene copy number estimation in plants using a single end-point PCR reaction
por: De Saeger, Jonas, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_bfmgbp5vvo0tcr97lmsmvtphla