PatMaN: rapid alignment of short sequences to large databases

Summary: We present a tool suited for searching for many short nucleotide sequences in large databases, allowing for a predefined number of gaps and mismatches. The commandline-driven program implements a non-deterministic automata matching algorithm on a keyword tree of the search strings. Both que...

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Detalles Bibliográficos
Autores principales: Prüfer, Kay, Stenzel, Udo, Dannemann, Michael, Green, Richard E., Lachmann, Michael, Kelso, Janet
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2718670/
https://www.ncbi.nlm.nih.gov/pubmed/18467344
http://dx.doi.org/10.1093/bioinformatics/btn223

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2718670/
https://www.ncbi.nlm.nih.gov/pubmed/18467344
http://dx.doi.org/10.1093/bioinformatics/btn223

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