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Exhaustive Search for Over-represented DNA Sequence Motifs with CisFinder
We present CisFinder software, which generates a comprehensive list of motifs enriched in a set of DNA sequences and describes them with position frequency matrices (PFMs). A new algorithm was designed to estimate PFMs directly from counts of n-mer words with and without gaps; then PFMs are extended...
| Autores principales: | , |
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| Formato: | Texto |
| Lenguaje: | English |
| Publicado: |
Oxford University Press
2009
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2762409/ https://www.ncbi.nlm.nih.gov/pubmed/19740934 http://dx.doi.org/10.1093/dnares/dsp014 |