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Exhaustive Search for Over-represented DNA Sequence Motifs with CisFinder

We present CisFinder software, which generates a comprehensive list of motifs enriched in a set of DNA sequences and describes them with position frequency matrices (PFMs). A new algorithm was designed to estimate PFMs directly from counts of n-mer words with and without gaps; then PFMs are extended...

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Detalles Bibliográficos
Autores principales: Sharov, Alexei A., Ko, Minoru S.H.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2762409/
https://www.ncbi.nlm.nih.gov/pubmed/19740934
http://dx.doi.org/10.1093/dnares/dsp014

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