Cargando…

A Statistical Method for the Detection of Alternative Splicing Using RNA-Seq

Deep sequencing of transcriptome (RNA-seq) provides unprecedented opportunity to interrogate plausible mRNA splicing patterns by mapping RNA-seq reads to exon junctions (thereafter junction reads). In most previous studies, exon junctions were detected by using the quantitative information of juncti...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wang, Liguo, Xi, Yuanxin, Yu, Jun, Dong, Liping, Yen, Laising, Li, Wei
Formato:	Texto
Lenguaje:	English
Publicado:	Public Library of Science 2010
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2798953/ https://www.ncbi.nlm.nih.gov/pubmed/20072613 http://dx.doi.org/10.1371/journal.pone.0008529

Ejemplares similares

AS-Quant: Detection and Visualization of Alternative Splicing Events with RNA-seq Data
por: Fahmi, Naima Ahmed, et al.
Publicado: (2021)

Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems
por: Liu, Ruolin, et al.
Publicado: (2014)

Comparison of Alternative Splicing Junction Detection Tools Using RNA-Seq Data
por: Ding, Lizhong, et al.
Publicado: (2017)

ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events
por: Denti, Luca, et al.
Publicado: (2018)

GLiMMPS: robust statistical model for regulatory variation of alternative splicing using RNA-seq data
por: Zhao, Keyan, et al.
Publicado: (2013)

ASNEO: Identification of personalized alternative splicing based neoantigens with RNA-seq
por: Zhang, Zhanbing, et al.
Publicado: (2020)

Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs
por: LeGault, Laura H., et al.
Publicado: (2013)

Detecting differential alternative splicing events in scRNA-seq with or without Unique Molecular Identifiers
por: Hu, Yu, et al.
Publicado: (2020)

SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts
por: Ryan, Michael C., et al.
Publicado: (2012)

Detecting Allele-Specific Alternative Splicing from Population-Scale RNA-Seq Data
por: Demirdjian, Levon, et al.
Publicado: (2020)

SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data
por: Rogers, Mark F, et al.
Publicado: (2012)

RNA-Seq analysis of splicing in Plasmodium falciparum uncovers new splice junctions, alternative splicing and splicing of antisense transcripts
por: Sorber, Katherine, et al.
Publicado: (2011)

Detection and visualization of differential splicing in RNA-Seq data with JunctionSeq
por: Hartley, Stephen W., et al.
Publicado: (2016)

Estimation of alternative splicing isoform frequencies from RNA-Seq data
por: Nicolae, Marius, et al.
Publicado: (2011)

Intron-centric estimation of alternative splicing from RNA-seq data
por: Pervouchine, Dmitri D., et al.
Publicado: (2013)

TCGASpliceSeq a compendium of alternative mRNA splicing in cancer
por: Ryan, Michael, et al.
Publicado: (2016)

MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data
por: Shen, Shihao, et al.
Publicado: (2012)

Systematically Differentiating Functions for Alternatively Spliced Isoforms through Integrating RNA-seq Data
por: Eksi, Ridvan, et al.
Publicado: (2013)

PrimerSeq: Design and Visualization of RT-PCR Primers for Alternative Splicing Using RNA-seq Data
por: Tokheim, Collin, et al.
Publicado: (2014)

Statistical methods on detecting differentially expressed genes for RNA-seq data
por: Chen, Zhongxue, et al.
Publicado: (2011)

DiffSplice: the genome-wide detection of differential splicing events with RNA-seq
por: Hu, Yin, et al.
Publicado: (2013)

Comprehensive Analysis of Alternative Splicing in Digitalis purpurea by Strand-Specific RNA-Seq
por: Wu, Bin, et al.
Publicado: (2014)

Chimeric RNA Design Principles for RNA-Mediated Gene Fusion
por: Gupta, Sachin Kumar, et al.
Publicado: (2022)

spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data
por: Vitting-Seerup, Kristoffer, et al.
Publicado: (2014)

Integrative analysis of Iso-Seq and RNA-seq reveals dynamic changes of alternative promoter, alternative splicing and alternative polyadenylation during Angiotensin II-induced senescence in rat primary aortic endothelial cells
por: Wen, Haimei, et al.
Publicado: (2023)

Detection of splice junctions from paired-end RNA-seq data by SpliceMap
por: Au, Kin Fai, et al.
Publicado: (2010)

Challenges in estimating percent inclusion of alternatively spliced junctions from RNA-seq data
por: Kakaradov, Boyko, et al.
Publicado: (2012)

KISSPLICE: de-novo calling alternative splicing events from RNA-seq data
por: Sacomoto, Gustavo AT, et al.
Publicado: (2012)

RNA-Seq Uncovers SNPs and Alternative Splicing Events in Asian Lotus (Nelumbo nucifera)
por: Yang, Mei, et al.
Publicado: (2015)

Transcriptional Landscapes of Long Non-coding RNAs and Alternative Splicing in Pyricularia oryzae Revealed by RNA-Seq
por: Li, Zhigang, et al.
Publicado: (2021)

Supersplat—spliced RNA-seq alignment
por: Bryant, Douglas W., et al.
Publicado: (2010)

Analysis of Genomic Alternative Splicing Patterns in Rat under Heat Stress Based on RNA-Seq Data
por: Huang, Shangzhen, et al.
Publicado: (2022)

ARH-seq: identification of differential splicing in RNA-seq data
por: Rasche, Axel, et al.
Publicado: (2014)

Global and unbiased detection of splice junctions from RNA-seq data
por: Ameur, Adam, et al.
Publicado: (2010)

Efficient and accurate detection of splice junctions from RNA-seq with Portcullis
por: Mapleson, Daniel, et al.
Publicado: (2018)

Detection of aberrant splicing events in RNA-seq data using FRASER
por: Mertes, Christian, et al.
Publicado: (2021)

Computational identification of tissue-specific alternative splicing elements in mouse genes from RNA-Seq
por: Wen, Ji, et al.
Publicado: (2010)

RNA-seq analysis of impact of PNN on gene expression and alternative splicing in corneal epithelial cells
por: Akin, Debra, et al.
Publicado: (2016)

RNA-seq analysis reveals alternative splicing under salt stress in cotton, Gossypium davidsonii
por: Zhu, Guozhong, et al.
Publicado: (2018)

SplAdder: identification, quantification and testing of alternative splicing events from RNA-Seq data
por: Kahles, André, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_t451c8qebmrang9t41cn4eckev