Cargando…

A Large Fraction of Extragenic RNA Pol II Transcription Sites Overlap Enhancers

Mammalian genomes are pervasively transcribed outside mapped protein-coding genes. One class of extragenic transcription products is represented by long non-coding RNAs (lncRNAs), some of which result from Pol_II transcription of bona-fide RNA genes. Whether all lncRNAs described insofar are product...

Descripción completa

Detalles Bibliográficos
Autores principales:	De Santa, Francesca, Barozzi, Iros, Mietton, Flore, Ghisletti, Serena, Polletti, Sara, Tusi, Betsabeh Khoramian, Muller, Heiko, Ragoussis, Jiannis, Wei, Chia-Lin, Natoli, Gioacchino
Formato:	Texto
Lenguaje:	English
Publicado:	Public Library of Science 2010
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2867938/ https://www.ncbi.nlm.nih.gov/pubmed/20485488 http://dx.doi.org/10.1371/journal.pbio.1000384

Ejemplares similares

A first exon termination checkpoint preferentially suppresses extragenic transcription
por: Austenaa, Liv M.I., et al.
Publicado: (2021)

High constitutive activity of a broad panel of housekeeping and tissue-specific cis-regulatory elements depends on a subset of ETS proteins
por: Curina, Alessia, et al.
Publicado: (2017)

A dual cis-regulatory code links IRF8 to constitutive and inducible gene expression in macrophages
por: Mancino, Alessandra, et al.
Publicado: (2015)

Dissection of acute stimulus-inducible nucleosome remodeling in mammalian cells
por: Comoglio, Federico, et al.
Publicado: (2019)

Fish the ChIPs: a pipeline for automated genomic annotation of ChIP-Seq data
por: Barozzi, Iros, et al.
Publicado: (2011)

Jmjd3 contributes to the control of gene expression in LPS-activated macrophages
por: De Santa, Francesca, et al.
Publicado: (2009)

Sustained activation of detoxification pathways promotes liver carcinogenesis in response to chronic bile acid-mediated damage
por: Collino, Agnese, et al.
Publicado: (2018)

The processing of repetitive extragenic palindromes: the structure of a repetitive extragenic palindrome bound to its associated nuclease
por: Messing, Simon A. J., et al.
Publicado: (2012)

Sex Bias in Primary Congenital Glaucoma Patients with and without CYP1B1 Mutations
por: Suri, Fatemeh, et al.
Publicado: (2009)

Genotyping results of Iranian PCG families suggests one or more PCG locus other than GCL3A, GCL3B, and GCL3C exist
por: Narooie-Nejad, Mehrnaz, et al.
Publicado: (2009)

Comparison of Microtensile Bond Strength of Silorane-Based Composite with the Conventional Methacrylate Composite to the Dentin of Primary Teeth
por: M, Sharifi, et al.
Publicado: (2016)

Contributions of MYOC and CYP1B1 mutations to JOAG
por: Bayat, Behnaz, et al.
Publicado: (2008)

Population Snapshots Predict Early Hematopoietic and Erythroid Hierarchies
por: Tusi, Betsabeh Khoramian, et al.
Publicado: (2018)

H3K9 trimethylation in active chromatin restricts the usage of functional CTCF sites in SINE B2 repeats
por: Gualdrini, Francesco, et al.
Publicado: (2022)

ExtraTrain: a database of Extragenic regions and Transcriptional information in prokaryotic organisms
por: Pareja, Eduardo, et al.
Publicado: (2006)

Extragenic Accumulation of RNA Polymerase II Enhances Transcription by RNA Polymerase III
por: Listerman, Imke, et al.
Publicado: (2007)

Bacterial repetitive extragenic palindromic sequences are DNA targets for Insertion Sequence elements
por: Tobes, Raquel, et al.
Publicado: (2006)

Opposing macrophage polarization programs show extensive epigenomic and transcriptional cross talks
por: Piccolo, Viviana, et al.
Publicado: (2017)

Extragenic suppressor mutations in ΔripA disrupt stability and function of LpxA
por: Miller, Cheryl N, et al.
Publicado: (2014)

Impact of educational intervention regarding COVID-19 on knowledge, attitude, and practice of students before dental school re-opening
por: Etebarian, Arghavan, et al.
Publicado: (2023)

Fundamental limits on dynamic inference from single-cell snapshots
por: Weinreb, Caleb, et al.
Publicado: (2018)

Extragenic suppressors of paralyzed flagellar mutations in Chlamydomonas reinhardtii identify loci that alter the inner dynein arms
Publicado: (1992)

Can tert-butylhydroquinone improve the healing of extracted tooth socket in rats?
por: Tusi, Somayeh Khoramian, et al.
Publicado: (2017)

Comparison of polymerization shrinkage of a new bulk‐fill flowable composite with other composites: An in vitro study
por: Khoramian Tusi, Somayeh, et al.
Publicado: (2022)

Evaluation of the pol/S Gene Overlapping Mutations in Chronic Hepatitis B Patients in Northern Cyprus
por: ARIKAN, AYSE, et al.
Publicado: (2019)

Comparative evaluation of DNase-seq footprint identification strategies
por: Barozzi, Iros, et al.
Publicado: (2014)

Corrigendum: Comparative evaluation of DNase-seq footprint identification strategies
por: Barozzi, Iros, et al.
Publicado: (2014)

Acid and Alkaline Phosphatase Levels in GCF during Orthodontic Tooth Movement
por: Farahani, Mohammad, et al.
Publicado: (2015)

Identification and characterization of repetitive extragenic palindromes (REP)-associated tyrosine transposases: implications for REP evolution and dynamics in bacterial genomes
por: Nunvar, Jaroslav, et al.
Publicado: (2010)

Intragenic and Extragenic Suppressors of Temperature Sensitive Mutations in the Replication Initiation Genes dnaD and dnaB of Bacillus subtilis
por: Rokop, Megan E., et al.
Publicado: (2009)

Conformational Diversity of Single-Stranded DNA from Bacterial Repetitive Extragenic Palindromes: Implications for the DNA Recognition Elements of Transposases
por: Charnavets, Tatsiana, et al.
Publicado: (2015)

Sex-specific up-regulation of p50-associated COX-2 extragenic RNA (PACER) lncRNA in periodontitis
por: Sayad, Arezou, et al.
Publicado: (2020)

A molecular network regulating the pro-inflammatory phenotype of human memory T lymphocytes
por: Emming, Stefan, et al.
Publicado: (2020)

Zc3h10 regulates adipogenesis by controlling translation and F-actin/mitochondria interaction
por: Audano, Matteo, et al.
Publicado: (2021)

Akkermansia muciniphila phospholipid induces homeostatic immune responses
por: Bae, Munhyung, et al.
Publicado: (2022)

Variation in extragenic repetitive DNA sequences in Pseudomonas syringae and potential use of modified REP primers in the identification of closely related isolates
por: Çepni, Elif, et al.
Publicado: (2012)

Programmable Nuclease-Based Integration into Novel Extragenic Genomic Safe Harbor Identified from Korean Population-Based CNV Analysis
por: Lee, Eun-Seo, et al.
Publicado: (2019)

Long-Read Sequencing Revealed Extragenic and Intragenic Duplications of Exons 56–61 in DMD in an Asymptomatic Male and a DMD Patient
por: Bai, Ying, et al.
Publicado: (2022)

Extragenic suppressor mutations that restore twitching motility to fimL mutants of Pseudomonas aeruginosa are associated with elevated intracellular cyclic AMP levels
por: Nolan, Laura M, et al.
Publicado: (2012)

Yin Yang 1 extends the Myc-related transcription factors network in embryonic stem cells
por: Vella, Pietro, et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_pru7b3h8sa8i5bmtapkjhttqn1