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HangOut: generating clean PSI-BLAST profiles for domains with long insertions

Summary: Profile-based similarity search is an essential step in structure-function studies of proteins. However, inclusion of non-homologous sequence segments into a profile causes its corruption and results in false positives. Profile corruption is common in multidomain proteins, and single domain...

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Detalles Bibliográficos
Autores principales: Kim, Bong-Hyun, Cong, Qian, Grishin, Nick V.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2881392/
https://www.ncbi.nlm.nih.gov/pubmed/20413635
http://dx.doi.org/10.1093/bioinformatics/btq208