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Distinct Patterns of Expression and Evolution of Intronless and Intron-Containing Mammalian Genes

Comparison of expression levels and breadth and evolutionary rates of intronless and intron-containing mammalian genes shows that intronless genes are expressed at lower levels, tend to be tissue specific, and evolve significantly faster than spliced genes. By contrast, monomorphic spliced genes tha...

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Autores principales: Shabalina, Svetlana A., Ogurtsov, Aleksey Y., Spiridonov, Alexey N., Novichkov, Pavel S., Spiridonov, Nikolay A., Koonin, Eugene V.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2908711/
https://www.ncbi.nlm.nih.gov/pubmed/20360214
http://dx.doi.org/10.1093/molbev/msq086
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author Shabalina, Svetlana A.
Ogurtsov, Aleksey Y.
Spiridonov, Alexey N.
Novichkov, Pavel S.
Spiridonov, Nikolay A.
Koonin, Eugene V.
author_facet Shabalina, Svetlana A.
Ogurtsov, Aleksey Y.
Spiridonov, Alexey N.
Novichkov, Pavel S.
Spiridonov, Nikolay A.
Koonin, Eugene V.
author_sort Shabalina, Svetlana A.
collection PubMed
description Comparison of expression levels and breadth and evolutionary rates of intronless and intron-containing mammalian genes shows that intronless genes are expressed at lower levels, tend to be tissue specific, and evolve significantly faster than spliced genes. By contrast, monomorphic spliced genes that are not subject to detectable alternative splicing and polymorphic alternatively spliced genes show similar statistically indistinguishable patterns of expression and evolution. Alternative splicing is most common in ancient genes, whereas intronless genes appear to have relatively recent origins. These results imply tight coupling between different stages of gene expression, in particular, transcription, splicing, and nucleocytosolic transport of transcripts, and suggest that formation of intronless genes is an important route of evolution of novel tissue-specific functions in animals.
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spelling pubmed-29087112010-07-23 Distinct Patterns of Expression and Evolution of Intronless and Intron-Containing Mammalian Genes Shabalina, Svetlana A. Ogurtsov, Aleksey Y. Spiridonov, Alexey N. Novichkov, Pavel S. Spiridonov, Nikolay A. Koonin, Eugene V. Mol Biol Evol Letters Comparison of expression levels and breadth and evolutionary rates of intronless and intron-containing mammalian genes shows that intronless genes are expressed at lower levels, tend to be tissue specific, and evolve significantly faster than spliced genes. By contrast, monomorphic spliced genes that are not subject to detectable alternative splicing and polymorphic alternatively spliced genes show similar statistically indistinguishable patterns of expression and evolution. Alternative splicing is most common in ancient genes, whereas intronless genes appear to have relatively recent origins. These results imply tight coupling between different stages of gene expression, in particular, transcription, splicing, and nucleocytosolic transport of transcripts, and suggest that formation of intronless genes is an important route of evolution of novel tissue-specific functions in animals. Oxford University Press 2010-08 2010-04-01 /pmc/articles/PMC2908711/ /pubmed/20360214 http://dx.doi.org/10.1093/molbev/msq086 Text en Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution 2010. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Letters
Shabalina, Svetlana A.
Ogurtsov, Aleksey Y.
Spiridonov, Alexey N.
Novichkov, Pavel S.
Spiridonov, Nikolay A.
Koonin, Eugene V.
Distinct Patterns of Expression and Evolution of Intronless and Intron-Containing Mammalian Genes
title Distinct Patterns of Expression and Evolution of Intronless and Intron-Containing Mammalian Genes
title_full Distinct Patterns of Expression and Evolution of Intronless and Intron-Containing Mammalian Genes
title_fullStr Distinct Patterns of Expression and Evolution of Intronless and Intron-Containing Mammalian Genes
title_full_unstemmed Distinct Patterns of Expression and Evolution of Intronless and Intron-Containing Mammalian Genes
title_short Distinct Patterns of Expression and Evolution of Intronless and Intron-Containing Mammalian Genes
title_sort distinct patterns of expression and evolution of intronless and intron-containing mammalian genes
topic Letters
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2908711/
https://www.ncbi.nlm.nih.gov/pubmed/20360214
http://dx.doi.org/10.1093/molbev/msq086
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