Cargando…

Detection of copy number variation from array intensity and sequencing read depth using a stepwise Bayesian model

BACKGROUND: Copy number variants (CNVs) have been demonstrated to occur at a high frequency and are now widely believed to make a significant contribution to the phenotypic variation in human populations. Array-based comparative genomic hybridization (array-CGH) and newly developed read-depth approa...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhang, Zhengdong D, Gerstein, Mark B
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2010
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2992546/ https://www.ncbi.nlm.nih.gov/pubmed/21034510 http://dx.doi.org/10.1186/1471-2105-11-539

Ejemplares similares

CONY: A Bayesian procedure for detecting copy number variations from sequencing read depths
por: Wei, Yu-Chung, et al.
Publicado: (2020)

Noise cancellation using total variation for copy number variation detection
por: Zare, Fatima, et al.
Publicado: (2018)

Copy number variation analysis based on AluScan sequences
por: Yang, Jian-Feng, et al.
Publicado: (2014)

VEGAWES: variational segmentation on whole exome sequencing for copy number detection
por: Anjum, Samreen, et al.
Publicado: (2015)

CNV-TV: A robust method to discover copy number variation from short sequencing reads
por: Duan, Junbo, et al.
Publicado: (2013)

Improving detection of copy-number variation by simultaneous bias correction and read-depth segmentation
por: Szatkiewicz, Jin P., et al.
Publicado: (2013)

Bayesian model to detect phenotype-specific genes for copy number data
por: González, Juan R, et al.
Publicado: (2012)

Quantitative analysis of differences in copy numbers using read depth obtained from PCR-enriched samples and controls
por: Reinecke, Frank, et al.
Publicado: (2015)

Development of copy number assays for detection and surveillance of piperaquine resistance associated plasmepsin 2/3 copy number variation in Plasmodium falciparum
por: Ansbro, Megan R., et al.
Publicado: (2020)

Identification of genomic indels and structural variations using split reads
por: Zhang, Zhengdong D, et al.
Publicado: (2011)

Using expression arrays for copy number detection: an example from E. coli
por: Skvortsov, Dmitriy, et al.
Publicado: (2007)

ReadDepth: A Parallel R Package for Detecting Copy Number Alterations from Short Sequencing Reads
por: Miller, Christopher A., et al.
Publicado: (2011)

Copy Number Variation detection from 1000 Genomes project exon capture sequencing data
por: Wu, Jiantao, et al.
Publicado: (2012)

A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data
por: Sepúlveda, Nuno, et al.
Publicado: (2013)

Improved Statistical Analysis for Array CGH-Based DNA Copy Number Aberrations
por: Jiang, Hongmei, et al.
Publicado: (2011)

CNVpytor: a tool for copy number variation detection and analysis from read depth and allele imbalance in whole-genome sequencing
por: Suvakov, Milovan, et al.
Publicado: (2021)

Microarray MAPH: accurate array-based detection of relative copy number in genomic DNA
por: Gibbons, Brian, et al.
Publicado: (2006)

CNV-seq, a new method to detect copy number variation using high-throughput sequencing
por: Xie, Chao, et al.
Publicado: (2009)

Copy number variation detection using next generation sequencing read counts
por: Wang, Heng, et al.
Publicado: (2014)

Normalization of array-CGH data: influence of copy number imbalances
por: Staaf, Johan, et al.
Publicado: (2007)

GtTR: Bayesian estimation of absolute tandem repeat copy number using sequence capture and high throughput sequencing
por: Ganesamoorthy, Devika, et al.
Publicado: (2018)

CAISC: A software to integrate copy number variations and single nucleotide mutations for genetic heterogeneity profiling and subclone detection by single-cell RNA sequencing
por: Kannan, Jeerthi, et al.
Publicado: (2022)

Fast detection of de novo copy number variants from SNP arrays for case-parent trios
por: Scharpf, Robert B, et al.
Publicado: (2012)

A stepwise framework for the normalization of array CGH data
por: Khojasteh, Mehrnoush, et al.
Publicado: (2005)

Copy number variation signature to predict human ancestry
por: Pronold, Melissa, et al.
Publicado: (2012)

Copy number variation genotyping using family information
por: Chu, Jen-hwa, et al.
Publicado: (2013)

Identification of Medium-Sized Copy Number Alterations in Whole-Genome Sequencing
por: Ozer, Hatice Gulcin, et al.
Publicado: (2015)

A Novel Graph-based Algorithm to Infer Recurrent Copy Number Variations in Cancer
por: Chi, Chen, et al.
Publicado: (2016)

CNVrd, a Read-Depth Algorithm for Assigning Copy-Number at the FCGR Locus: Population-Specific Tagging of Copy Number Variation at FCGR3B
por: Nguyen, Hoang tan, et al.
Publicado: (2013)

Effective normalization for copy number variation in Hi-C data
por: Servant, Nicolas, et al.
Publicado: (2018)

GROM-RD: resolving genomic biases to improve read depth detection of copy number variants
por: Smith, Sean D., et al.
Publicado: (2015)

CARAT: A novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays
por: Huang, Jing, et al.
Publicado: (2006)

MSX2 copy number increase and craniosynostosis: copy number variation detected by array comparative genomic hybridization
por: de Oliveira Pelegrino, Karla, et al.
Publicado: (2012)

Evaluation of copy number variation detection for a SNP array platform
por: Zhang, Xin, et al.
Publicado: (2014)

Performances of NIPT for copy number variations at different sequencing depths using the semiconductor sequencing platform
por: Yang, Jiexia, et al.
Publicado: (2021)

Simple binary segmentation frameworks for identifying variation in DNA copy number
por: Yang, Tae Young
Publicado: (2012)

Genome-Wide Mapping of Copy Number Variation in Humans: Comparative Analysis of High Resolution Array Platforms
por: Haraksingh, Rajini R., et al.
Publicado: (2011)

Comprehensive characterization of copy number variation (CNV) called from array, long- and short-read data
por: Lavrichenko, Ksenia, et al.
Publicado: (2021)

SeqCNV: a novel method for identification of copy number variations in targeted next-generation sequencing data
por: Chen, Yong, et al.
Publicado: (2017)

Hecaton: reliably detecting copy number variation in plant genomes using short read sequencing data
por: Wijfjes, Raúl Y., et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_ltkirg94dm1bi45seua7jsgp80