MLTreeMap - accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies

BACKGROUND: Shotgun sequencing of environmental DNA is an essential technique for characterizing uncultivated microbes in situ. However, the taxonomic and functional assignment of the obtained sequence fragments remains a pressing problem. RESULTS: Existing algorithms are largely optimized for speed...

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Detalles Bibliográficos
Autores principales: Stark, Manuel, Berger, Simon A, Stamatakis, Alexandros, von Mering, Christian
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2010
Materias:
Methodology Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091657/
https://www.ncbi.nlm.nih.gov/pubmed/20687950
http://dx.doi.org/10.1186/1471-2164-11-461

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091657/
https://www.ncbi.nlm.nih.gov/pubmed/20687950
http://dx.doi.org/10.1186/1471-2164-11-461

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