Cargando…

Integration of Expressed Sequence Tag Data Flanking Predicted RNA Secondary Structures Facilitates Novel Non-Coding RNA Discovery

Many computational methods have been used to predict novel non-coding RNAs (ncRNAs), but none, to our knowledge, have explicitly investigated the impact of integrating existing cDNA-based Expressed Sequence Tag (EST) data that flank structural RNA predictions. To determine whether flanking EST data...

Descripción completa

Detalles Bibliográficos
Autores principales:	Krzyzanowski, Paul M., Price, Feodor D., Muro, Enrique M., Rudnicki, Michael A., Andrade-Navarro, Miguel A.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2011
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3115948/ https://www.ncbi.nlm.nih.gov/pubmed/21698286 http://dx.doi.org/10.1371/journal.pone.0020561

Ejemplares similares

Identification of transcribed protein coding sequence remnants within lincRNAs
por: Talyan, Sweta, et al.
Publicado: (2018)

Impact of flanking chromosomal sequences on localization and silencing by the human non-coding RNA XIST
por: Kelsey, Angela D., et al.
Publicado: (2015)

The distributions of protein coding genes within chromatin domains in relation to human disease
por: Muro, Enrique M., et al.
Publicado: (2019)

Biological solution conditions and flanking sequence modulate LLPS of RNA G-quadruplex structures
por: Williams, Allison M., et al.
Publicado: (2022)

orthoFind Facilitates the Discovery of Homologous and Orthologous Proteins
por: Mier, Pablo, et al.
Publicado: (2015)

FSTVAL: a new web tool to validate bulk flanking sequence tags
por: Kim, Joung Sug, et al.
Publicado: (2012)

The non-coding RNA composition of the mitotic chromosome by 5′-tag sequencing
por: Meng, Yicong, et al.
Publicado: (2016)

A new method to identify flanking sequence tags in chlamydomonas using 3’-RACE
por: Meslet-Cladière, Laurence, et al.
Publicado: (2012)

The different activities of RNA G-quadruplex structures are controlled by flanking sequences
por: Zheng, Alice J-L, et al.
Publicado: (2021)

Pseudogenes as an alternative source of natural antisense transcripts
por: Muro, Enrique M, et al.
Publicado: (2010)

ChIP on SNP-chip for genome-wide analysis of human histone H4 hyperacetylation
por: McCann, Jennifer A, et al.
Publicado: (2007)

Rapid, Single-Cell Analysis and Discovery of Vectored mRNA Transfection In Vivo with a loxP-Flanked tdTomato Reporter Mouse
por: Kauffman, Kevin J., et al.
Publicado: (2017)

Identification of novel stem cell markers using gap analysis of gene expression data
por: Krzyzanowski, Paul M, et al.
Publicado: (2007)

Sequences flanking the transmembrane segments facilitate mitochondrial localization and membrane fusion by mitofusin
por: Huang, Xiaofang, et al.
Publicado: (2017)

Recent developments in StemBase: a tool to study gene expression in human and murine stem cells
por: Sandie, Reatha, et al.
Publicado: (2009)

Left Flank Pain
por: Nappe, Thomas M., et al.
Publicado: (2015)

Long non-coding RNA discovery across the genus anopheles reveals conserved secondary structures within and beyond the Gambiae complex
por: Jenkins, Adam M, et al.
Publicado: (2015)

Discovery of Proteomic Code with mRNA Assisted Protein Folding
por: Biro, Jan C
Publicado: (2008)

Gene function in early mouse embryonic stem cell differentiation
por: Sene, Kagnew Hailesellasse, et al.
Publicado: (2007)

Proteomic Analysis of Beef Tenderloin and Flank Assessed Using an Isobaric Tag for Relative and Absolute Quantitation (iTRAQ)
por: Lei, Zhaomin, et al.
Publicado: (2020)

Deep sequencing of small RNA facilitates tissue and sex associated microRNA discovery in zebrafish
por: Vaz, Candida, et al.
Publicado: (2015)

Amplification of the Gene Ontology annotation of Affymetrix probe sets
por: Muro, Enrique M, et al.
Publicado: (2006)

Co-regulation of paralog genes in the three-dimensional chromatin architecture
por: Ibn-Salem, Jonas, et al.
Publicado: (2017)

Discoveries for Long Non-Coding RNA Dynamics in Traumatic Brain Injury
por: Lim, Key-Hwan, et al.
Publicado: (2020)

Conformations of Flanking Bases in HIV-1 RNA DIS Kissing Complexes Studied by Molecular Dynamics
por: Réblová, Kamila, et al.
Publicado: (2007)

Risk factors for the development of flank hernias and bulges following surgical flank approaches to the kidney in adults
por: Osman, Tarek, et al.
Publicado: (2018)

Creating QR and Tag codes
por: Dutson, Phil
Publicado: (2013)

Characteristics of the Flank Magnetopause: THEMIS Observations
por: Haaland, S., et al.
Publicado: (2019)

A periodic pattern of mRNA secondary structure created by the genetic code
por: Shabalina, Svetlana A., et al.
Publicado: (2006)

Comparison of Flank Super Abrasive Machining vs. Flank Milling on Inconel(®) 718 Surfaces
por: González, Haizea, et al.
Publicado: (2018)

A woman with flank pain and swelling
por: Ali, Afrah A., et al.
Publicado: (2022)

Monitoring the promoter activity of long noncoding RNAs and stem cell differentiation through knock-in of sgRNA flanked by tRNA in an intron
por: Zhao, Yu-Ting, et al.
Publicado: (2021)

A rare cause of flank pain
por: Pengo, Martino F., et al.
Publicado: (2010)

An efficient genetic algorithm for structural RNA pairwise alignment and its application to non-coding RNA discovery in yeast
por: Taneda, Akito
Publicado: (2008)

The pseudogenes of Mycobacterium leprae reveal the functional relevance of gene order within operons
por: Muro, Enrique M., et al.
Publicado: (2011)

Acute left flank pain
por: Hoffmann, Beatrice
Publicado: (2009)

Young woman with flank pain
por: Teijido, John Thomas, et al.
Publicado: (2020)

Genetic Code Expansion Facilitates Position‐Selective Labeling of RNA for Biophysical Studies
por: Hegelein, Andreas, et al.
Publicado: (2020)

Tfold: efficient in silico prediction of non-coding RNA secondary structures
por: Engelen, Stéfan, et al.
Publicado: (2010)

Long non-coding RNA tagging and expression manipulation via CRISPR/Cas9-mediated targeted insertion
por: Cheng, Tian-Lin, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_04gtkg3nhkr120otc8pjvcspv7