Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation

BACKGROUND: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest approach to parallelisation with SIMD technology has previously been described by Farrar in 2007. The aim of this study was...

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Detalles Bibliográficos
Autor principal: Rognes, Torbjørn
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2011
Materias:
Methodology Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3120707/
https://www.ncbi.nlm.nih.gov/pubmed/21631914
http://dx.doi.org/10.1186/1471-2105-12-221

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3120707/
https://www.ncbi.nlm.nih.gov/pubmed/21631914
http://dx.doi.org/10.1186/1471-2105-12-221

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