Cargando…
Classifying short genomic fragments from novel lineages using composition and homology
BACKGROUND: The assignment of taxonomic attributions to DNA fragments recovered directly from the environment is a vital step in metagenomic data analysis. Assignments can be made using rank-specific classifiers, which assign reads to taxonomic labels from a predetermined level such as named species...
Autores principales: | Parks, Donovan H, MacDonald, Norman J, Beiko, Robert G |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2011
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3173459/ https://www.ncbi.nlm.nih.gov/pubmed/21827705 http://dx.doi.org/10.1186/1471-2105-12-328 |
Ejemplares similares
-
Rapid identification of high-confidence taxonomic assignments for metagenomic data
por: MacDonald, Norman J., et al.
Publicado: (2012) -
Distinguishing Microbial Genome Fragments Based on Their Composition:
Evolutionary and Comparative Genomic Perspectives
por: Perry, Scott C., et al.
Publicado: (2010) -
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
por: Chaumeil, Pierre-Alain, et al.
Publicado: (2020) -
Comparative Genomics of Candidate Phylum TM6 Suggests That Parasitism Is Widespread and Ancestral in This Lineage
por: Yeoh, Yun Kit, et al.
Publicado: (2016) -
Lateral Transfer of Genes and Gene Fragments in Prokaryotes
por: Chan, Cheong Xin, et al.
Publicado: (2009)