JaPaFi: A Novel Program for the Identification of Highly Conserved DNA Sequences

We describe the use of Java Pattern Finder (JaPaFi) to identify short (<100 nt) highly conserved sequences in a series of poxvirus genomes. The algorithm utilizes pattern matching to identify approximate matches appearing at least once in each member of a set of genomes; a key feature is that the...

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Detalles Bibliográficos
Autores principales: Sadeque, Aliya, Barsky, Marina, Marass, Francesco, Kruczkiewicz, Peter, Upton, Chris
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Molecular Diversity Preservation International (MDPI) 2010
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3185747/
https://www.ncbi.nlm.nih.gov/pubmed/21994712
http://dx.doi.org/10.3390/v2091867

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3185747/
https://www.ncbi.nlm.nih.gov/pubmed/21994712
http://dx.doi.org/10.3390/v2091867

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