Cargando…

The Statistics of Bulk Segregant Analysis Using Next Generation Sequencing

We describe a statistical framework for QTL mapping using bulk segregant analysis (BSA) based on high throughput, short-read sequencing. Our proposed approach is based on a smoothed version of the standard [Image: see text] statistic, and takes into account variation in allele frequency estimates du...

Descripción completa

Detalles Bibliográficos
Autores principales:	Magwene, Paul M., Willis, John H., Kelly, John K.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2011
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3207950/ https://www.ncbi.nlm.nih.gov/pubmed/22072954 http://dx.doi.org/10.1371/journal.pcbi.1002255

Ejemplares similares

Evaluation of nine statistics to identify QTLs in bulk segregant analysis using next generation sequencing approaches
por: de la Fuente Cantó, Carla, et al.
Publicado: (2022)

Next-generation sequencing-based bulked segregant analysis without sequencing the parental genomes
por: Zhang, Jianbo, et al.
Publicado: (2021)

Next-generation sequencing from bulked segregant analysis identifies a dwarfism gene in watermelon
por: Dong, Wei, et al.
Publicado: (2018)

Next-Generation Sequencing from Bulked-Segregant Analysis Accelerates the Simultaneous Identification of Two Qualitative Genes in Soybean
por: Song, Jian, et al.
Publicado: (2017)

Identification of a cold-tolerant locus in rice (Oryza sativa L.) using bulked segregant analysis with a next-generation sequencing strategy
por: Sun, Jian, et al.
Publicado: (2018)

Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat
por: Trick, Martin, et al.
Publicado: (2012)

BSTA: a targeted approach combines bulked segregant analysis with next- generation sequencing and de novo transcriptome assembly for SNP discovery in sunflower
por: Livaja, Maren, et al.
Publicado: (2013)

Combining Next Generation Sequencing with Bulked Segregant Analysis to Fine Map a Stem Moisture Locus in Sorghum (Sorghum bicolor L. Moench)
por: Han, Yucui, et al.
Publicado: (2015)

Rapid mapping and cloning of the virescent-1 gene in cotton by bulked segregant analysis–next generation sequencing and virus-induced gene silencing strategies
por: Zhu, Jiankun, et al.
Publicado: (2017)

Conjunctive Analyses of Bulk Segregant Analysis Sequencing and Bulk Segregant RNA Sequencing to Identify Candidate Genes Controlling Spikelet Sterility of Foxtail Millet
por: Gao, Yongbin, et al.
Publicado: (2022)

Targeted amplicon sequencing + next-generation sequencing–based bulked segregant analysis identified genetic loci associated with preharvest sprouting tolerance in common buckwheat (Fagopyrum esculentum)
por: Takeshima, Ryoma, et al.
Publicado: (2021)

Statistical analysis of next generation sequencing data
por: Datta, Somnath, et al.
Publicado: (2014)

Mapping and Identifying a Candidate Gene Plr4, a Recessive Gene Regulating Purple Leaf in Rice, by Using Bulked Segregant and Transcriptome Analysis with Next-Generation Sequencing
por: Gao, Ju, et al.
Publicado: (2019)

Bulk and Single-Cell Next-Generation Sequencing: Individualizing Treatment for Colorectal Cancer
por: Kyrochristos, Ioannis D., et al.
Publicado: (2019)

Predicting the genomic resolution of bulk segregant analysis
por: Shen, Runxi, et al.
Publicado: (2022)

Bulk Segregant Analysis Using Single Nucleotide Polymorphism Microarrays
por: Becker, Anthony, et al.
Publicado: (2011)

Harnessing the potential of bulk segregant analysis sequencing and its related approaches in crop breeding
por: Majeed, Aasim, et al.
Publicado: (2022)

Statistics for Next Generation Sequencing – Meeting Report
por: Wu, Hao, et al.
Publicado: (2012)

Exon capture and bulk segregant analysis: rapid discovery of causative mutations using high-throughput sequencing
por: del Viso, Florencia, et al.
Publicado: (2012)

Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis
por: Haase, Nicholas J., et al.
Publicado: (2015)

Bulked-Segregant Analysis Coupled to Whole Genome Sequencing (BSA-Seq) for Rapid Gene Cloning in Maize
por: Klein, Harry, et al.
Publicado: (2018)

A DArT platform for quantitative bulked segregant analysis
por: Wenzl, Peter, et al.
Publicado: (2007)

Statistical Quantification of Methylation Levels by Next-Generation Sequencing
por: Wu, Guodong, et al.
Publicado: (2011)

Genetic Mapping by Bulk Segregant Analysis in Drosophila: Experimental Design and Simulation-Based Inference
por: Pool, John E.
Publicado: (2016)

Sequencing of bulks of segregants allows dissection of genetic control of amylose content in rice
por: Wambugu, Peterson, et al.
Publicado: (2017)

Identification of Multiple Grain Shape-Related Loci in Rice Using Bulked Segregant Analysis With High-Throughput Sequencing
por: Wu, Lian, et al.
Publicado: (2020)

Discovery of stripe rust resistance with incomplete dominance in wild emmer wheat using bulked segregant analysis sequencing
por: Klymiuk, Valentyna, et al.
Publicado: (2022)

Assessing the Architecture of Drosophila mojavensis Locomotor Evolution with Bulk Segregant Analysis
por: Benowitz, Kyle M., et al.
Publicado: (2019)

Statistical guidelines for quality control of next-generation sequencing techniques
por: Sprang, Maximilian, et al.
Publicado: (2021)

SCSIM: Jointly simulating correlated single-cell and bulk next-generation DNA sequencing data
por: Giguere, Collin, et al.
Publicado: (2020)

PyBSASeq: a simple and effective algorithm for bulked segregant analysis with whole-genome sequencing data
por: Zhang, Jianbo, et al.
Publicado: (2020)

Bulked Segregant RNA Sequencing Revealed Difference Between Virulent and Avirulent Brown Planthoppers
por: Guan, Wei, et al.
Publicado: (2022)

Use of Bulk Segregant Analysis for Determining the Genetic Basis of Azole Resistance in the Opportunistic Pathogen Aspergillus fumigatus
por: Ashton, George D., et al.
Publicado: (2022)

nQuire: a statistical framework for ploidy estimation using next generation sequencing
por: Weiß, Clemens L., et al.
Publicado: (2018)

BSA4Yeast: Web-based quantitative trait locus linkage analysis and bulk segregant analysis of yeast sequencing data
por: Zhang, Zhi, et al.
Publicado: (2019)

Development of Molecular Marker Linked to Seed Hardness in Pomegranate Using Bulked Segregant Analysis
por: Yazıcı, Keziban, et al.
Publicado: (2023)

EXPLoRA-web: linkage analysis of quantitative trait loci using bulk segregant analysis
por: Pulido-Tamayo, Sergio, et al.
Publicado: (2016)

Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize
por: Li, Pengcheng, et al.
Publicado: (2018)

Fine-Mapping the Branching Habit Trait in Cultivated Peanut by Combining Bulked Segregant Analysis and High-Throughput Sequencing
por: Kayam, Galya, et al.
Publicado: (2017)

Bulk pollen sequencing reveals rapid evolution of segregation distortion in the male germline of Arabidopsis hybrids
por: Corbett‐Detig, Russell, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_l5vm9q0gmvdmi9g63ermce0ue1