Cargando…

Molecular basis of fosmidomycin's action on the human malaria parasite Plasmodium falciparum

The human malaria parasite Plasmodium falciparum is responsible for the deaths of more than a million people each year. Fosmidomycin has been proven to be efficient in the treatment of P. falciparum malaria by inhibiting 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR), an enzyme of the non-mev...

Descripción completa

Detalles Bibliográficos
Autores principales: Umeda, Tomonobu, Tanaka, Nobutada, Kusakabe, Yoshio, Nakanishi, Masayuki, Kitade, Yukio, Nakamura, Kazuo T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3216497/
https://www.ncbi.nlm.nih.gov/pubmed/22355528
http://dx.doi.org/10.1038/srep00009
_version_ 1782216517198282752
author Umeda, Tomonobu
Tanaka, Nobutada
Kusakabe, Yoshio
Nakanishi, Masayuki
Kitade, Yukio
Nakamura, Kazuo T.
author_facet Umeda, Tomonobu
Tanaka, Nobutada
Kusakabe, Yoshio
Nakanishi, Masayuki
Kitade, Yukio
Nakamura, Kazuo T.
author_sort Umeda, Tomonobu
collection PubMed
description The human malaria parasite Plasmodium falciparum is responsible for the deaths of more than a million people each year. Fosmidomycin has been proven to be efficient in the treatment of P. falciparum malaria by inhibiting 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR), an enzyme of the non-mevalonate pathway, which is absent in humans. However, the structural details of DXR inhibition by fosmidomycin in P. falciparum are unknown. Here, we report the crystal structures of fosmidomycin-bound complete quaternary complexes of PfDXR. Our study revealed that (i) an intrinsic flexibility of the PfDXR molecule accounts for an induced-fit movement to accommodate the bound inhibitor in the active site and (ii) a cis arrangement of the oxygen atoms of the hydroxamate group of the bound inhibitor is essential for tight binding of the inhibitor to the active site metal. We expect the present structures to be useful guides for the design of more effective antimalarial compounds.
format Online
Article
Text
id pubmed-3216497
institution National Center for Biotechnology Information
language English
publishDate 2011
publisher Nature Publishing Group
record_format MEDLINE/PubMed
spelling pubmed-32164972011-12-22 Molecular basis of fosmidomycin's action on the human malaria parasite Plasmodium falciparum Umeda, Tomonobu Tanaka, Nobutada Kusakabe, Yoshio Nakanishi, Masayuki Kitade, Yukio Nakamura, Kazuo T. Sci Rep Article The human malaria parasite Plasmodium falciparum is responsible for the deaths of more than a million people each year. Fosmidomycin has been proven to be efficient in the treatment of P. falciparum malaria by inhibiting 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR), an enzyme of the non-mevalonate pathway, which is absent in humans. However, the structural details of DXR inhibition by fosmidomycin in P. falciparum are unknown. Here, we report the crystal structures of fosmidomycin-bound complete quaternary complexes of PfDXR. Our study revealed that (i) an intrinsic flexibility of the PfDXR molecule accounts for an induced-fit movement to accommodate the bound inhibitor in the active site and (ii) a cis arrangement of the oxygen atoms of the hydroxamate group of the bound inhibitor is essential for tight binding of the inhibitor to the active site metal. We expect the present structures to be useful guides for the design of more effective antimalarial compounds. Nature Publishing Group 2011-06-14 /pmc/articles/PMC3216497/ /pubmed/22355528 http://dx.doi.org/10.1038/srep00009 Text en Copyright © 2011, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by-nc-nd/3.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-No Derivative Works 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/
spellingShingle Article
Umeda, Tomonobu
Tanaka, Nobutada
Kusakabe, Yoshio
Nakanishi, Masayuki
Kitade, Yukio
Nakamura, Kazuo T.
Molecular basis of fosmidomycin's action on the human malaria parasite Plasmodium falciparum
title Molecular basis of fosmidomycin's action on the human malaria parasite Plasmodium falciparum
title_full Molecular basis of fosmidomycin's action on the human malaria parasite Plasmodium falciparum
title_fullStr Molecular basis of fosmidomycin's action on the human malaria parasite Plasmodium falciparum
title_full_unstemmed Molecular basis of fosmidomycin's action on the human malaria parasite Plasmodium falciparum
title_short Molecular basis of fosmidomycin's action on the human malaria parasite Plasmodium falciparum
title_sort molecular basis of fosmidomycin's action on the human malaria parasite plasmodium falciparum
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3216497/
https://www.ncbi.nlm.nih.gov/pubmed/22355528
http://dx.doi.org/10.1038/srep00009
work_keys_str_mv AT umedatomonobu molecularbasisoffosmidomycinsactiononthehumanmalariaparasiteplasmodiumfalciparum
AT tanakanobutada molecularbasisoffosmidomycinsactiononthehumanmalariaparasiteplasmodiumfalciparum
AT kusakabeyoshio molecularbasisoffosmidomycinsactiononthehumanmalariaparasiteplasmodiumfalciparum
AT nakanishimasayuki molecularbasisoffosmidomycinsactiononthehumanmalariaparasiteplasmodiumfalciparum
AT kitadeyukio molecularbasisoffosmidomycinsactiononthehumanmalariaparasiteplasmodiumfalciparum
AT nakamurakazuot molecularbasisoffosmidomycinsactiononthehumanmalariaparasiteplasmodiumfalciparum