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Large-scale motif discovery using DNA Gray code and equiprobable oligomers

Motivation: How to find motifs from genome-scale functional sequences, such as all the promoters in a genome, is a challenging problem. Word-based methods count the occurrences of oligomers to detect excessively represented ones. This approach is known to be fast and accurate compared with other met...

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Detalles Bibliográficos
Autores principales: Ichinose, Natsuhiro, Yada, Tetsushi, Gotoh, Osamu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3244767/
https://www.ncbi.nlm.nih.gov/pubmed/22057160
http://dx.doi.org/10.1093/bioinformatics/btr606