Cargando…
Optimized detection of transcription factor-binding sites in ChIP-seq experiments
We developed a computational procedure for optimizing the binding site detections in a given ChIP-seq experiment by maximizing their reproducibility under bootstrap sampling. We demonstrate how the procedure can improve the detection accuracies beyond those obtained with the default settings of popu...
Autores principales: | Elo, Laura L., Kallio, Aleksi, Laajala, Teemu D., Hawkins, R. David, Korpelainen, Eija, Aittokallio, Tero |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2012
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245948/ https://www.ncbi.nlm.nih.gov/pubmed/22009681 http://dx.doi.org/10.1093/nar/gkr839 |
Ejemplares similares
-
A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments
por: Laajala, Teemu D, et al.
Publicado: (2009) -
ChIP-Enrich: gene set enrichment testing for ChIP-seq data
por: Welch, Ryan P., et al.
Publicado: (2014) -
Inferring direct DNA binding from ChIP-seq
por: Bailey, Timothy L., et al.
Publicado: (2012) -
Parallel factor ChIP provides essential internal control for quantitative differential ChIP-seq
por: Guertin, Michael J, et al.
Publicado: (2018) -
Impact of sequencing depth in ChIP-seq experiments
por: Jung, Youngsook L., et al.
Publicado: (2014)