Probabilistic Inference for Nucleosome Positioning with MNase-Based or Sonicated Short-Read Data

We describe a model-based method, PING, for predicting nucleosome positions in MNase-Seq and MNase- or sonicated-ChIP-Seq data. PING compares favorably to NPS and TemplateFilter in scalability, accuracy and robustness to low read density. To demonstrate that PING predictions from widely available so...

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Detalles Bibliográficos
Autores principales: Zhang, Xuekui, Robertson, Gordon, Woo, Sangsoon, Hoffman, Brad G., Gottardo, Raphael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2012
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3290535/
https://www.ncbi.nlm.nih.gov/pubmed/22393380
http://dx.doi.org/10.1371/journal.pone.0032095

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3290535/
https://www.ncbi.nlm.nih.gov/pubmed/22393380
http://dx.doi.org/10.1371/journal.pone.0032095

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