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Speed-Dependent Cellular Decision Making in Nonequilibrium Genetic Circuits

Despite being governed by the principles of nonequilibrium transitions, gene expression dynamics underlying cell fate decision is poorly understood. In particular, the effect of signaling speed on cellular decision making is still unclear. Here we show that the decision between alternative cell fate...

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Autores principales: Nené, Nuno R., Garca-Ojalvo, Jordi, Zaikin, Alexey
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3302799/
https://www.ncbi.nlm.nih.gov/pubmed/22427883
http://dx.doi.org/10.1371/journal.pone.0032779
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author Nené, Nuno R.
Garca-Ojalvo, Jordi
Zaikin, Alexey
author_facet Nené, Nuno R.
Garca-Ojalvo, Jordi
Zaikin, Alexey
author_sort Nené, Nuno R.
collection PubMed
description Despite being governed by the principles of nonequilibrium transitions, gene expression dynamics underlying cell fate decision is poorly understood. In particular, the effect of signaling speed on cellular decision making is still unclear. Here we show that the decision between alternative cell fates, in a structurally symmetric circuit, can be biased depending on the speed at which the system is forced to go through the decision point. The circuit consists of two mutually inhibiting and self-activating genes, forced by two external signals with identical stationary values but different transient times. Under these conditions, slow passage through the decision point leads to a consistently biased decision due to the transient signaling asymmetry, whereas fast passage reduces and eventually eliminates the switch imbalance. The effect is robust to noise and shows that dynamic bifurcations, well known in nonequilibrium physics, are important for the control of genetic circuits.
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spelling pubmed-33027992012-03-16 Speed-Dependent Cellular Decision Making in Nonequilibrium Genetic Circuits Nené, Nuno R. Garca-Ojalvo, Jordi Zaikin, Alexey PLoS One Research Article Despite being governed by the principles of nonequilibrium transitions, gene expression dynamics underlying cell fate decision is poorly understood. In particular, the effect of signaling speed on cellular decision making is still unclear. Here we show that the decision between alternative cell fates, in a structurally symmetric circuit, can be biased depending on the speed at which the system is forced to go through the decision point. The circuit consists of two mutually inhibiting and self-activating genes, forced by two external signals with identical stationary values but different transient times. Under these conditions, slow passage through the decision point leads to a consistently biased decision due to the transient signaling asymmetry, whereas fast passage reduces and eventually eliminates the switch imbalance. The effect is robust to noise and shows that dynamic bifurcations, well known in nonequilibrium physics, are important for the control of genetic circuits. Public Library of Science 2012-03-13 /pmc/articles/PMC3302799/ /pubmed/22427883 http://dx.doi.org/10.1371/journal.pone.0032779 Text en Nené et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Nené, Nuno R.
Garca-Ojalvo, Jordi
Zaikin, Alexey
Speed-Dependent Cellular Decision Making in Nonequilibrium Genetic Circuits
title Speed-Dependent Cellular Decision Making in Nonequilibrium Genetic Circuits
title_full Speed-Dependent Cellular Decision Making in Nonequilibrium Genetic Circuits
title_fullStr Speed-Dependent Cellular Decision Making in Nonequilibrium Genetic Circuits
title_full_unstemmed Speed-Dependent Cellular Decision Making in Nonequilibrium Genetic Circuits
title_short Speed-Dependent Cellular Decision Making in Nonequilibrium Genetic Circuits
title_sort speed-dependent cellular decision making in nonequilibrium genetic circuits
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3302799/
https://www.ncbi.nlm.nih.gov/pubmed/22427883
http://dx.doi.org/10.1371/journal.pone.0032779
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