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A Common SMAD7 Variant Is Associated with Risk of Colorectal Cancer: Evidence from a Case-Control Study and a Meta-Analysis

BACKGROUND: A common genetic variant, rs4939827, located in SMAD7, was identified by two recent genome-wide association (GWA) studies to be strongly associated with the risk of colorectal cancer (CRC). However, the following replication studies yielded conflicting results. METHOD AND FINDINGS: We co...

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Autores principales: Song, Qibin, Zhu, Beibei, Hu, Weiguo, Cheng, Liming, Gong, Hongyun, Xu, Bin, Zheng, Xiawen, Zou, Li, Zhong, Rong, Duan, Shengyu, Chen, Wei, Rui, Rui, Wu, Jing, Miao, Xiaoping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3310071/
https://www.ncbi.nlm.nih.gov/pubmed/22457752
http://dx.doi.org/10.1371/journal.pone.0033318
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author Song, Qibin
Zhu, Beibei
Hu, Weiguo
Cheng, Liming
Gong, Hongyun
Xu, Bin
Zheng, Xiawen
Zou, Li
Zhong, Rong
Duan, Shengyu
Chen, Wei
Rui, Rui
Wu, Jing
Miao, Xiaoping
author_facet Song, Qibin
Zhu, Beibei
Hu, Weiguo
Cheng, Liming
Gong, Hongyun
Xu, Bin
Zheng, Xiawen
Zou, Li
Zhong, Rong
Duan, Shengyu
Chen, Wei
Rui, Rui
Wu, Jing
Miao, Xiaoping
author_sort Song, Qibin
collection PubMed
description BACKGROUND: A common genetic variant, rs4939827, located in SMAD7, was identified by two recent genome-wide association (GWA) studies to be strongly associated with the risk of colorectal cancer (CRC). However, the following replication studies yielded conflicting results. METHOD AND FINDINGS: We conducted a case-control study of 641 cases and 1037 controls in a Chinese population and then performed a meta-analysis, integrating our and published data of 34313 cases and 33251 controls, to clarify the relationship between rs4939827 and CRC risk. In our case-control study, the dominant model was significant associated with increased CRC risk [Odds Ratio (OR) = 1.46; 95% confidence interval (95% CI), 1.19–1.80]. The following meta-analysis further confirmed this significant association for all genetic models but with significant between-study heterogeneity (all P for heterogeneity <0.1). By stratified analysis, we revealed that ethnicity, sample size, and tumor sites might constitute the source of heterogeneity. The cumulative analysis suggested that evident tendency to significant association was seen with adding study samples over time; whilst, sensitive analysis showed results before and after removal of each study were similar, indicating the highly stability of the current results. CONCLUSION: Results from our case-control study and the meta-analysis collectively confirmed the significant association of the variant rs4939827 with increased risk of colorectal cancer. Nevertheless, fine-mapping of the susceptibility loci defined by rs4939287 should be imposed to reveal causal variant.
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spelling pubmed-33100712012-03-28 A Common SMAD7 Variant Is Associated with Risk of Colorectal Cancer: Evidence from a Case-Control Study and a Meta-Analysis Song, Qibin Zhu, Beibei Hu, Weiguo Cheng, Liming Gong, Hongyun Xu, Bin Zheng, Xiawen Zou, Li Zhong, Rong Duan, Shengyu Chen, Wei Rui, Rui Wu, Jing Miao, Xiaoping PLoS One Research Article BACKGROUND: A common genetic variant, rs4939827, located in SMAD7, was identified by two recent genome-wide association (GWA) studies to be strongly associated with the risk of colorectal cancer (CRC). However, the following replication studies yielded conflicting results. METHOD AND FINDINGS: We conducted a case-control study of 641 cases and 1037 controls in a Chinese population and then performed a meta-analysis, integrating our and published data of 34313 cases and 33251 controls, to clarify the relationship between rs4939827 and CRC risk. In our case-control study, the dominant model was significant associated with increased CRC risk [Odds Ratio (OR) = 1.46; 95% confidence interval (95% CI), 1.19–1.80]. The following meta-analysis further confirmed this significant association for all genetic models but with significant between-study heterogeneity (all P for heterogeneity <0.1). By stratified analysis, we revealed that ethnicity, sample size, and tumor sites might constitute the source of heterogeneity. The cumulative analysis suggested that evident tendency to significant association was seen with adding study samples over time; whilst, sensitive analysis showed results before and after removal of each study were similar, indicating the highly stability of the current results. CONCLUSION: Results from our case-control study and the meta-analysis collectively confirmed the significant association of the variant rs4939827 with increased risk of colorectal cancer. Nevertheless, fine-mapping of the susceptibility loci defined by rs4939287 should be imposed to reveal causal variant. Public Library of Science 2012-03-21 /pmc/articles/PMC3310071/ /pubmed/22457752 http://dx.doi.org/10.1371/journal.pone.0033318 Text en Song et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Song, Qibin
Zhu, Beibei
Hu, Weiguo
Cheng, Liming
Gong, Hongyun
Xu, Bin
Zheng, Xiawen
Zou, Li
Zhong, Rong
Duan, Shengyu
Chen, Wei
Rui, Rui
Wu, Jing
Miao, Xiaoping
A Common SMAD7 Variant Is Associated with Risk of Colorectal Cancer: Evidence from a Case-Control Study and a Meta-Analysis
title A Common SMAD7 Variant Is Associated with Risk of Colorectal Cancer: Evidence from a Case-Control Study and a Meta-Analysis
title_full A Common SMAD7 Variant Is Associated with Risk of Colorectal Cancer: Evidence from a Case-Control Study and a Meta-Analysis
title_fullStr A Common SMAD7 Variant Is Associated with Risk of Colorectal Cancer: Evidence from a Case-Control Study and a Meta-Analysis
title_full_unstemmed A Common SMAD7 Variant Is Associated with Risk of Colorectal Cancer: Evidence from a Case-Control Study and a Meta-Analysis
title_short A Common SMAD7 Variant Is Associated with Risk of Colorectal Cancer: Evidence from a Case-Control Study and a Meta-Analysis
title_sort common smad7 variant is associated with risk of colorectal cancer: evidence from a case-control study and a meta-analysis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3310071/
https://www.ncbi.nlm.nih.gov/pubmed/22457752
http://dx.doi.org/10.1371/journal.pone.0033318
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