Cargando…
A Bayesian analysis of the chromosome architecture of human disorders by integrating reductionist data
In this paper, we present a Bayesian approach to estimate a chromosome and a disorder network from the Online Mendelian Inheritance in Man (OMIM) database. In contrast to other approaches, we obtain statistic rather than deterministic networks enabling a parametric control in the uncertainty of the...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2012
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3400933/ https://www.ncbi.nlm.nih.gov/pubmed/22822426 http://dx.doi.org/10.1038/srep00513 |
_version_ | 1782238548978565120 |
---|---|
author | Emmert-Streib, Frank de Matos Simoes, Ricardo Tripathi, Shailesh Glazko, Galina V. Dehmer, Matthias |
author_facet | Emmert-Streib, Frank de Matos Simoes, Ricardo Tripathi, Shailesh Glazko, Galina V. Dehmer, Matthias |
author_sort | Emmert-Streib, Frank |
collection | PubMed |
description | In this paper, we present a Bayesian approach to estimate a chromosome and a disorder network from the Online Mendelian Inheritance in Man (OMIM) database. In contrast to other approaches, we obtain statistic rather than deterministic networks enabling a parametric control in the uncertainty of the underlying disorder-disease gene associations contained in the OMIM, on which the networks are based. From a structural investigation of the chromosome network, we identify three chromosome subgroups that reflect architectural differences in chromosome-disorder associations that are predictively exploitable for a functional analysis of diseases. |
format | Online Article Text |
id | pubmed-3400933 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-34009332012-07-20 A Bayesian analysis of the chromosome architecture of human disorders by integrating reductionist data Emmert-Streib, Frank de Matos Simoes, Ricardo Tripathi, Shailesh Glazko, Galina V. Dehmer, Matthias Sci Rep Article In this paper, we present a Bayesian approach to estimate a chromosome and a disorder network from the Online Mendelian Inheritance in Man (OMIM) database. In contrast to other approaches, we obtain statistic rather than deterministic networks enabling a parametric control in the uncertainty of the underlying disorder-disease gene associations contained in the OMIM, on which the networks are based. From a structural investigation of the chromosome network, we identify three chromosome subgroups that reflect architectural differences in chromosome-disorder associations that are predictively exploitable for a functional analysis of diseases. Nature Publishing Group 2012-07-20 /pmc/articles/PMC3400933/ /pubmed/22822426 http://dx.doi.org/10.1038/srep00513 Text en Copyright © 2012, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by-nc-sa/3.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-ShareALike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ |
spellingShingle | Article Emmert-Streib, Frank de Matos Simoes, Ricardo Tripathi, Shailesh Glazko, Galina V. Dehmer, Matthias A Bayesian analysis of the chromosome architecture of human disorders by integrating reductionist data |
title | A Bayesian analysis of the chromosome architecture of human disorders by integrating reductionist data |
title_full | A Bayesian analysis of the chromosome architecture of human disorders by integrating reductionist data |
title_fullStr | A Bayesian analysis of the chromosome architecture of human disorders by integrating reductionist data |
title_full_unstemmed | A Bayesian analysis of the chromosome architecture of human disorders by integrating reductionist data |
title_short | A Bayesian analysis of the chromosome architecture of human disorders by integrating reductionist data |
title_sort | bayesian analysis of the chromosome architecture of human disorders by integrating reductionist data |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3400933/ https://www.ncbi.nlm.nih.gov/pubmed/22822426 http://dx.doi.org/10.1038/srep00513 |
work_keys_str_mv | AT emmertstreibfrank abayesiananalysisofthechromosomearchitectureofhumandisordersbyintegratingreductionistdata AT dematossimoesricardo abayesiananalysisofthechromosomearchitectureofhumandisordersbyintegratingreductionistdata AT tripathishailesh abayesiananalysisofthechromosomearchitectureofhumandisordersbyintegratingreductionistdata AT glazkogalinav abayesiananalysisofthechromosomearchitectureofhumandisordersbyintegratingreductionistdata AT dehmermatthias abayesiananalysisofthechromosomearchitectureofhumandisordersbyintegratingreductionistdata AT emmertstreibfrank bayesiananalysisofthechromosomearchitectureofhumandisordersbyintegratingreductionistdata AT dematossimoesricardo bayesiananalysisofthechromosomearchitectureofhumandisordersbyintegratingreductionistdata AT tripathishailesh bayesiananalysisofthechromosomearchitectureofhumandisordersbyintegratingreductionistdata AT glazkogalinav bayesiananalysisofthechromosomearchitectureofhumandisordersbyintegratingreductionistdata AT dehmermatthias bayesiananalysisofthechromosomearchitectureofhumandisordersbyintegratingreductionistdata |