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Comparison of Secondary Structure Formation Using 10 Different Force Fields in Microsecond Molecular Dynamics Simulations

We have compared molecular dynamics (MD) simulations of a β-hairpin forming peptide derived from the protein Nrf2 with 10 biomolecular force fields using trajectories of at least 1 μs. The total simulation time was 37.2 μs. Previous studies have shown that different force fields, water models, simul...

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Detalles Bibliográficos
Autores principales: Cino, Elio A., Choy, Wing-Yiu, Karttunen, Mikko
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2012
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3419458/
https://www.ncbi.nlm.nih.gov/pubmed/22904695
http://dx.doi.org/10.1021/ct300323g