Cargando…
Using a priori knowledge to align sequencing reads to their exact genomic position
The use of a priori knowledge in the alignment of targeted sequencing data is investigated using computational experiments. Adapting a Needleman–Wunsch algorithm to incorporate the genomic position information from the targeted capture, we demonstrate that alignment can be done to just the target re...
Autores principales: | Böttcher, René, Amberg, Ronny, Ruzius, F. P., Guryev, V., Verhaegh, Wim F. J., Beyerlein, Peter, van der Zaag, P. J. |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2012
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3439880/ https://www.ncbi.nlm.nih.gov/pubmed/22581774 http://dx.doi.org/10.1093/nar/gks393 |
Ejemplares similares
-
BatAlign: an incremental method for accurate alignment of sequencing reads
por: Lim, Jing-Quan, et al.
Publicado: (2015) -
Accurate SNP and mutation detection by targeted custom microarray-based genomic enrichment of short-fragment sequencing libraries
por: Mokry, Michal, et al.
Publicado: (2010) -
Hobbes: optimized gram-based methods for efficient read alignment
por: Ahmadi, Athena, et al.
Publicado: (2012) -
Incorporating sequence quality data into alignment improves DNA read mapping
por: Frith, Martin C., et al.
Publicado: (2010) -
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
por: Liao, Yang, et al.
Publicado: (2013)