Cargando…

A Method for Large-scale Identification of Protein Arginine Methylation

The lack of methods for proteome-scale detection of arginine methylation restricts our knowledge of its relevance in physiological and pathological processes. Here we show that most tryptic peptides containing methylated arginine(s) are highly basic and hydrophilic. Consequently, they could be consi...

Descripción completa

Detalles Bibliográficos
Autores principales:	Uhlmann, Thomas, Geoghegan, Vincent L., Thomas, Benjamin, Ridlova, Gabriela, Trudgian, David C., Acuto, Oreste
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	The American Society for Biochemistry and Molecular Biology 2012
Materias:	Technological Innovation and Resources
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3494207/ https://www.ncbi.nlm.nih.gov/pubmed/22865923 http://dx.doi.org/10.1074/mcp.M112.020743

Ejemplares similares

Comprehensive identification of arginine methylation in primary T cells reveals regulatory roles in cell signalling
por: Geoghegan, Vincent, et al.
Publicado: (2015)

Inferring Physical Protein Contacts from Large-Scale Purification Data of Protein Complexes
por: Schelhorn, Sven-Eric, et al.
Publicado: (2011)

Precision Neoantigen Discovery Using Large-scale Immunopeptidomes and Composite Modeling of MHC Peptide Presentation
por: Pyke, Rachel Marty, et al.
Publicado: (2021)

Nic1 Inactivation Enables Stable Isotope Labeling with (13)C(6)(15)N(4)-Arginine in Schizosaccharomyces pombe
por: Carpy, Alejandro, et al.
Publicado: (2015)

MhcVizPipe: A Quality Control Software for Rapid Assessment of Small- to Large-Scale Immunopeptidome Datasets
por: Kovalchik, Kevin A., et al.
Publicado: (2021)

Sensitive Immunopeptidomics by Leveraging Available Large-Scale Multi-HLA Spectral Libraries, Data-Independent Acquisition, and MS/MS Prediction
por: Pak, HuiSong, et al.
Publicado: (2021)

Immunoaffinity Enrichment and Mass Spectrometry Analysis of Protein Methylation
por: Guo, Ailan, et al.
Publicado: (2014)

A Chemical Acetylation-Based Mass Spectrometry Platform for Histone Methylation Profiling
por: Zappacosta, Francesca, et al.
Publicado: (2021)

ProMetheusDB: An In-Depth Analysis of the High-Quality Human Methyl-proteome
por: Massignani, Enrico, et al.
Publicado: (2022)

The Human PDZome: A Gateway to PSD95-Disc Large-Zonula Occludens (PDZ)-mediated Functions
por: Belotti, Edwige, et al.
Publicado: (2013)

Enhanced Peptide Identification by Electron Transfer Dissociation Using an Improved Mascot Percolator
por: Wright, James C., et al.
Publicado: (2012)

Multi-species Identification of Polymorphic Peptide Variants via Propagation in Spectral Networks
por: Na, Seungjin, et al.
Publicado: (2016)

Identification of Novel Kinases of Tau Using Fluorescence Complementation Mass Spectrometry (FCMS)
por: Kao, Der-Shyang, et al.
Publicado: (2022)

Identification of Endogenous Kinase Substrates by Proximity Labeling Combined with Kinase Perturbation and Phosphorylation Motifs
por: Niinae, Tomoya, et al.
Publicado: (2021)

PEAKS DB: De Novo Sequencing Assisted Database Search for Sensitive and Accurate Peptide Identification
por: Zhang, Jing, et al.
Publicado: (2012)

In-Depth Comparison of Matrigel Dissolving Methods on Proteomic Profiling of Organoids
por: Wang, Man, et al.
Publicado: (2021)

Evaluation and Refinement of Sample Preparation Methods for Extracellular Matrix Proteome Coverage
por: McCabe, Maxwell C., et al.
Publicado: (2021)

Overcoming Species Boundaries in Peptide Identification with Bayesian Information Criterion-driven Error-tolerant Peptide Search (BICEPS)
por: Renard, Bernhard Y., et al.
Publicado: (2012)

DeMix Workflow for Efficient Identification of Cofragmented Peptides in High Resolution Data-dependent Tandem Mass Spectrometry
por: Zhang, Bo, et al.
Publicado: (2014)

Open Database Searching Enables the Identification and Comparison of Bacterial Glycoproteomes without Defining Glycan Compositions Prior to Searching
por: Ahmad Izaham, Ameera Raudah, et al.
Publicado: (2020)

inSPIRE: An Open-Source Tool for Increased Mass Spectrometry Identification Rates Using Prosit Spectral Prediction
por: Cormican, John A., et al.
Publicado: (2022)

Quantitative Tagless Copurification: A Method to Validate and Identify Protein-Protein Interactions
por: Shatsky, Maxim, et al.
Publicado: (2016)

Fast and Accurate Bacterial Species Identification in Urine Specimens Using LC-MS/MS Mass Spectrometry and Machine Learning
por: Roux-Dalvai, Florence, et al.
Publicado: (2019)

DEqMS: A Method for Accurate Variance Estimation in Differential Protein Expression Analysis
por: Zhu, Yafeng, et al.
Publicado: (2020)

SCASP: A Simple and Robust SDS-Aided Sample Preparation Method for Proteomic Research
por: Gan, Guohong, et al.
Publicado: (2021)

Trimethylacetic Anhydride–Based Derivatization Facilitates Quantification of Histone Marks at the MS1 Level
por: Kuchaříková, Hana, et al.
Publicado: (2021)

Mass Spectrometric Quantification of Histone Post-translational Modifications by a Hybrid Chemical Labeling Method
por: Maile, Tobias M., et al.
Publicado: (2015)

The PRoteomics IDEntification (PRIDE) Converter 2 Framework: An Improved Suite of Tools to Facilitate Data Submission to the PRIDE Database and the ProteomeXchange Consortium
por: Côté, Richard G., et al.
Publicado: (2012)

Comparative Performance of Four Methods for High-throughput Glycosylation Analysis of Immunoglobulin G in Genetic and Epidemiological Research
por: Huffman, Jennifer E., et al.
Publicado: (2014)

Matrix Assisted Ionization Vacuum (MAIV), a New Ionization Method for Biological Materials Analysis Using Mass Spectrometry
por: Inutan, Ellen D., et al.
Publicado: (2013)

Structural Analysis of PTM Hotspots (SAPH-ire) – A Quantitative Informatics Method Enabling the Discovery of Novel Regulatory Elements in Protein Families
por: Dewhurst, Henry M., et al.
Publicado: (2015)

Comparative Proteome Signatures of Trace Samples by Multiplexed Data-Independent Acquisition
por: Ctortecka, Claudia, et al.
Publicado: (2021)

pepDESC: A Method for the Detection of Differentially Expressed Proteins for Mass Spectrometry-Based Single-Cell Proteomics Using Peptide-level Information
por: Zhang, Yutong
Publicado: (2023)

Prediction of Protein Complexes in Trypanosoma brucei by Protein Correlation Profiling Mass Spectrometry and Machine Learning
por: Crozier, Thomas W. M., et al.
Publicado: (2017)

Quantitative Tracking of Isotope Flows in Proteomes of Microbial Communities
por: Pan, Chongle, et al.
Publicado: (2011)

Real-Time Search-Assisted Acquisition on a Tribrid Mass Spectrometer Improves Coverage in Multiplexed Single-Cell Proteomics
por: Furtwängler, Benjamin, et al.
Publicado: (2022)

Multiple Protein Analysis of Formalin-fixed and Paraffin-embedded Tissue Samples with Reverse phase Protein Arrays
por: Assadi, Maziar, et al.
Publicado: (2013)

Online Parallel Accumulation–Serial Fragmentation (PASEF) with a Novel Trapped Ion Mobility Mass Spectrometer
por: Meier, Florian, et al.
Publicado: (2018)

A High Through-put Platform for Recombinant Antibodies to Folded Proteins
por: Hornsby, Michael, et al.
Publicado: (2015)

In Vivo Analysis of Proteomes and Interactomes Using Parallel Affinity Capture (iPAC) Coupled to Mass Spectrometry
por: Rees, Johanna S., et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_k197mlka92lkn2pissl1ukqb7j