Cargando…

Accelerated maximum likelihood parameter estimation for stochastic biochemical systems

BACKGROUND: A prerequisite for the mechanistic simulation of a biochemical system is detailed knowledge of its kinetic parameters. Despite recent experimental advances, the estimation of unknown parameter values from observed data is still a bottleneck for obtaining accurate simulation results. Many...

Descripción completa

Detalles Bibliográficos
Autores principales:	Daigle, Bernie J, Roh, Min K, Petzold, Linda R, Niemi, Jarad
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2012
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3496601/ https://www.ncbi.nlm.nih.gov/pubmed/22548918 http://dx.doi.org/10.1186/1471-2105-13-68

Ejemplares similares

Global parameter estimation methods for stochastic biochemical systems
por: Poovathingal, Suresh Kumar, et al.
Publicado: (2010)

SParSE++: improved event-based stochastic parameter search
por: Roh, Min K., et al.
Publicado: (2016)

Restricted maximum likelihood estimation of genetic principal components and smoothed covariance matrices
por: Meyer, Karin, et al.
Publicado: (2005)

Approximate maximum likelihood estimation for stochastic chemical kinetics
por: Andreychenko, Aleksandr, et al.
Publicado: (2012)

stochprofML: stochastic profiling using maximum likelihood estimation in R
por: Amrhein, Lisa, et al.
Publicado: (2021)

Accelerated regression-based summary statistics for discrete stochastic systems via approximate simulators
por: Jiang, Richard M., et al.
Publicado: (2021)

A maximum likelihood framework for protein design
por: Kleinman, Claudia L, et al.
Publicado: (2006)

Maximum likelihood estimators for inverse problems with nuisance parameters
por: Bindslev, H
Publicado: (1997)

Mapping linked quantitative trait loci via residual maximum likelihood
por: Grignola, FE, et al.
Publicado: (1997)

Maximum likelihood estimates of two-locus recombination fractions under some natural inequality restrictions
por: Zhou, Ying, et al.
Publicado: (2008)

Perturbative method for maximum likelihood estimation of the Weibull distribution parameters
por: Coria, V. H., et al.
Publicado: (2016)

Maximum Penalized Likelihood Estimation
por: LaRiccia, Vincent N, et al.
Publicado: (2009)

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
por: Nguyen, Lam-Tung, et al.
Publicado: (2015)

Towards in vivo estimation of reaction kinetics using high-throughput metabolomics data: a maximum likelihood approach
por: Zhang, Weiruo, et al.
Publicado: (2015)

Mapping quantitative trait loci in outcross populations via residual maximum likelihood. I. Methodology
por: Grignola, FE, et al.
Publicado: (1996)

Efficient estimation of the maximum metabolic productivity of batch systems
por: St. John, Peter C., et al.
Publicado: (2017)

On maximum likelihood estimation of the concentration parameter of von Mises–Fisher distributions
por: Hornik, Kurt, et al.
Publicado: (2013)

MLEP: an R package for exploring the maximum likelihood estimates of penetrance parameters
por: Sugaya, Yuki
Publicado: (2012)

Covariance of maximum likelihood evolutionary distances between sequences aligned pairwise
por: Dessimoz, Christophe, et al.
Publicado: (2008)

Maximum likelihood estimation of functional relationships
por: Nagelkerke, Nico J D
Publicado: (1992)

Cannons and sparrows: an exact maximum likelihood non-parametric test for meta-analysis of k 2 × 2 tables
por: Paul, Lawrence M.
Publicado: (2018)

Maximum likelihood estimation of biophysical parameters of synaptic receptors from macroscopic currents
por: Stepanyuk, Andrey, et al.
Publicado: (2014)

Generalized method of moments for estimating parameters of stochastic reaction networks
por: Lück, Alexander, et al.
Publicado: (2016)

Restricted maximum likelihood estimation for animal models using derivatives of the likelihood
por: Meyer, K, et al.
Publicado: (1996)

The admixture maximum likelihood test to test for association between rare variants and disease phenotypes
por: Tyrer, Jonathan P, et al.
Publicado: (2013)

The effect of normalisation and error model choice on the distribution of the maximum likelihood estimator for a biochemical reaction
por: Thomaseth, Caterina, et al.
Publicado: (2022)

Information bounds and nonparametric maximum likelihood estimation
por: Groeneboom, Piet, et al.
Publicado: (1992)

Precision of maximum likelihood estimation in adaptive designs
por: Graf, Alexandra Christine, et al.
Publicado: (2015)

Targeted Maximum Likelihood Estimation for Pharmacoepidemiologic Research
por: Pang, Menglan, et al.
Publicado: (2016)

Semiparametric maximum likelihood probability density estimation
por: Kwasniok, Frank
Publicado: (2021)

Frequency-Domain Maximum-Likelihood Estimation of High-Voltage Pulse Transformer Model Parameters
por: Aguglia, D, et al.
Publicado: (2014)

MLTreeMap - accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies
por: Stark, Manuel, et al.
Publicado: (2010)

New Maximum Likelihood Estimators for Eukaryotic Intron Evolution
por: Nguyen, Hung D, et al.
Publicado: (2005)

Maximum penalized likelihood estimation of interspike interval distribution
por: Pokora, Ondrej, et al.
Publicado: (2013)

The nonparametric maximum likelihood estimator for middle-censored data
por: Shen, Pao-Sheng
Publicado: (2011)

Minimum Divergence Estimators, Maximum Likelihood and the Generalized Bootstrap
por: Broniatowski, Michel
Publicado: (2021)

A guide to Whittle maximum likelihood estimator in MATLAB
por: Roume, Clément
Publicado: (2023)

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
por: Matsen, Frederick A, et al.
Publicado: (2010)

A maximum likelihood algorithm for reconstructing 3D structures of human chromosomes from chromosomal contact data
por: Oluwadare, Oluwatosin, et al.
Publicado: (2018)

Microbial-Maximum Likelihood Estimation Tool for Microbial Quantification in Food From Left-Censored Data Using Maximum Likelihood Estimation for Microbial Risk Assessment
por: Bahk, Gyung Jin, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_tbb3kl1kfjooktl3ittrff11i3