Coupling SIMD and SIMT architectures to boost performance of a phylogeny-aware alignment kernel

BACKGROUND: Aligning short DNA reads to a reference sequence alignment is a prerequisite for detecting their biological origin and analyzing them in a phylogenetic context. With the PaPaRa tool we introduced a dedicated dynamic programming algorithm for simultaneously aligning short reads to referen...

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Detalles Bibliográficos
Autores principales: Alachiotis, Nikolaos, Berger, Simon A, Stamatakis, Alexandros
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2012
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3496624/
https://www.ncbi.nlm.nih.gov/pubmed/22876807
http://dx.doi.org/10.1186/1471-2105-13-196

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3496624/
https://www.ncbi.nlm.nih.gov/pubmed/22876807
http://dx.doi.org/10.1186/1471-2105-13-196

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