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Coupling SIMD and SIMT architectures to boost performance of a phylogeny-aware alignment kernel
BACKGROUND: Aligning short DNA reads to a reference sequence alignment is a prerequisite for detecting their biological origin and analyzing them in a phylogenetic context. With the PaPaRa tool we introduced a dedicated dynamic programming algorithm for simultaneously aligning short reads to referen...
| Autores principales: | , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
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BioMed Central
2012
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3496624/ https://www.ncbi.nlm.nih.gov/pubmed/22876807 http://dx.doi.org/10.1186/1471-2105-13-196 |