Cargando…

Accurate Prediction of the Dynamical Changes within the Second PDZ Domain of PTP1e

Experimental NMR relaxation studies have shown that peptide binding induces dynamical changes at the side-chain level throughout the second PDZ domain of PTP1e, identifying as such the collection of residues involved in long-range communication. Even though different computational approaches have id...

Descripción completa

Detalles Bibliográficos
Autores principales:	Cilia, Elisa, Vuister, Geerten W., Lenaerts, Tom
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2012
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3510070/ https://www.ncbi.nlm.nih.gov/pubmed/23209399 http://dx.doi.org/10.1371/journal.pcbi.1002794

Ejemplares similares

Sin3A recruits Tet1 to the PAH1 domain via a highly conserved Sin3-Interaction Domain
por: Chandru, Aditya, et al.
Publicado: (2018)

Genome-Wide Analysis of PDZ Domain Binding Reveals Inherent Functional Overlap within the PDZ Interaction Network
por: te Velthuis, Aartjan J. W., et al.
Publicado: (2011)

Interaction prediction and classification of PDZ domains
por: Kalyoncu, Sibel, et al.
Publicado: (2010)

Phosphorylation-induced changes in the PDZ domain of Dishevelled 3
por: Jurásek, Miroslav, et al.
Publicado: (2021)

The DynaMine webserver: predicting protein dynamics from sequence
por: Cilia, Elisa, et al.
Publicado: (2014)

Ensemble-Based Analysis of the Dynamic Allostery in the PSD-95 PDZ3 Domain in Relation to the General Variability of PDZ Structures
por: Dudola, Dániel, et al.
Publicado: (2020)

Simple high‐resolution NMR spectroscopy as a tool in molecular biology
por: Mureddu, Luca, et al.
Publicado: (2019)

Seeking allosteric networks in PDZ domains
por: Gautier, Candice, et al.
Publicado: (2018)

The Conformational Plasticity Vista of PDZ Domains
por: Murciano-Calles, Javier
Publicado: (2020)

PDZ Domains and Viral Infection: Versatile Potentials of HPV-PDZ Interactions in relation to Malignancy
por: Nagasaka, Kazunori, et al.
Publicado: (2013)

Fragment-Based Drug Discovery by NMR. Where Are the Successes and Where can It Be Improved?
por: Mureddu, Luca G., et al.
Publicado: (2022)

Overlapping transport and chaperone-binding functions within a bacterial twin-arginine signal peptide
por: Grahl, Sabine, et al.
Publicado: (2012)

Domain Analysis and Motif Matcher (DAMM): A Program to Predict Selectivity Determinants in Monosiga brevicollis PDZ Domains Using Human PDZ Data
por: Wofford, Haley A., et al.
Publicado: (2021)

A Specificity Map for the PDZ Domain Family
por: Tonikian, Raffi, et al.
Publicado: (2008)

The PDZ Domain as a Complex Adaptive System
por: Kurakin, Alexei, et al.
Publicado: (2007)

Application of Wavelet Transform for PDZ Domain Classification
por: Daqrouq, Khaled, et al.
Publicado: (2015)

Plasticity of PDZ domains in ligand recognition and signaling
por: Ivarsson, Ylva
Publicado: (2012)

Resonance assignment of the Shank1 PDZ domain
por: Sánta, Anna, et al.
Publicado: (2022)

A Simple PB/LIE Free Energy Function Accurately Predicts the Peptide Binding Specificity of the Tiam1 PDZ Domain
por: Panel, Nicolas, et al.
Publicado: (2017)

Predicting PDZ domain mediated protein interactions from structure
por: Hui, Shirley, et al.
Publicado: (2013)

Structural Insights into a Wildtype Domain of the Oncoprotein E6 and Its Interaction with a PDZ Domain
por: Mischo, André, et al.
Publicado: (2013)

Structural basis of coronavirus E protein interactions with human PALS1 PDZ domain
por: Javorsky, Airah, et al.
Publicado: (2021)

Predicting virus mutations through statistical relational learning
por: Cilia, Elisa, et al.
Publicado: (2014)

A physical model for PDZ-domain/peptide interactions
por: Kaufmann, Kristian, et al.
Publicado: (2010)

PDZ domains and their binding partners: structure, specificity, and modification
por: Lee, Ho-Jin, et al.
Publicado: (2010)

Membrane Binding and Modulation of the PDZ Domain of PICK1
por: Erlendsson, Simon, et al.
Publicado: (2015)

Analysis of Multiple HPV E6 PDZ Interactions Defines Type-Specific PDZ Fingerprints That Predict Oncogenic Potential
por: Thomas, Miranda, et al.
Publicado: (2016)

The TRPV5/6 calcium channels contain multiple calmodulin binding sites with differential binding properties
por: Kovalevskaya, Nadezda V., et al.
Publicado: (2012)

Modular organization of the PDZ domains in the human discs-large protein suggests a mechanism for coupling PDZ domain-binding proteins to ATP and the membrane cytoskeleton
Publicado: (1996)

The Role of Flexibility and Conformational Selection in the Binding Promiscuity of PDZ Domains
por: Münz, Márton, et al.
Publicado: (2012)

Viral Interactions with PDZ Domain-Containing Proteins—An Oncogenic Trait?
por: James, Claire D., et al.
Publicado: (2016)

Proteome‐wide analysis of phospho‐regulated PDZ domain interactions
por: Sundell, Gustav N, et al.
Publicado: (2018)

Role of Terahertz (THz) Fluctuations in the Allosteric Properties of the PDZ Domains
por: Conti Nibali, Valeria, et al.
Publicado: (2017)

Emerging Themes in PDZ Domain Signaling: Structure, Function, and Inhibition
por: Liu, Xu, et al.
Publicado: (2019)

Selective function of the PDZ domain of Dishevelled in noncanonical Wnt signalling
por: Mieszczanek, Juliusz, et al.
Publicado: (2022)

PDZ and LIM Domain-Encoding Genes: Their Role in Cancer Development
por: Jiang, Xinyuan, et al.
Publicado: (2023)

Structures of the human Pals1 PDZ domain with and without ligand suggest gated access of Crb to the PDZ peptide-binding groove
por: Ivanova, Marina E., et al.
Publicado: (2015)

Proteome scanning to predict PDZ domain interactions using support vector machines
por: Hui, Shirley, et al.
Publicado: (2010)

Rewiring of PDZ Domain-Ligand Interaction Network Contributed to Eukaryotic Evolution
por: Kim, Jinho, et al.
Publicado: (2012)

Tolerance of Protein Folding to a Circular Permutation in a PDZ Domain
por: Hultqvist, Greta, et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_rk6edc4e9kltqucptkn0lpr6b2