Cargando…
PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species
Pan-genome ortholog clustering tool (PanOCT) is a tool for pan-genomic analysis of closely related prokaryotic species or strains. PanOCT uses conserved gene neighborhood information to separate recently diverged paralogs into orthologous clusters where homology-only clustering methods cannot. The r...
Autores principales: | Fouts, Derrick E., Brinkac, Lauren, Beck, Erin, Inman, Jason, Sutton, Granger |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2012
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3526259/ https://www.ncbi.nlm.nih.gov/pubmed/22904089 http://dx.doi.org/10.1093/nar/gks757 |
Ejemplares similares
-
Large-scale comparative analysis of microbial pan-genomes using PanOCT
por: Inman, Jason M, et al.
Publicado: (2019) -
PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes
por: Clarke, Thomas H., et al.
Publicado: (2018) -
panX: pan-genome analysis and exploration
por: Ding, Wei, et al.
Publicado: (2018) -
Efficient exploration of pan-cancer networks by generalized covariance selection and interactive web content
por: Kling, Teresia, et al.
Publicado: (2015) -
A novel method of consensus pan-chromosome assembly and large-scale comparative analysis reveal the highly flexible pan-genome of Acinetobacter baumannii
por: Chan, Agnes P., et al.
Publicado: (2015)