Using the Fast Fourier Transform to Accelerate the Computational Search for RNA Conformational Switches

Using complex roots of unity and the Fast Fourier Transform, we design a new thermodynamics-based algorithm, FFTbor, that computes the Boltzmann probability that secondary structures differ by [Image: see text] base pairs from an arbitrary initial structure of a given RNA sequence. The algorithm, wh...

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Detalles Bibliográficos
Autores principales: Senter, Evan, Sheikh, Saad, Dotu, Ivan, Ponty, Yann, Clote, Peter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2012
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3526635/
https://www.ncbi.nlm.nih.gov/pubmed/23284639
http://dx.doi.org/10.1371/journal.pone.0050506

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3526635/
https://www.ncbi.nlm.nih.gov/pubmed/23284639
http://dx.doi.org/10.1371/journal.pone.0050506

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