SOAPindel: Efficient identification of indels from short paired reads

We present a new approach to indel calling that explicitly exploits that indel differences between a reference and a sequenced sample make the mapping of reads less efficient. We assign all unmapped reads with a mapped partner to their expected genomic positions and then perform extensive de novo as...

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Detalles Bibliográficos
Autores principales: Li, Shengting, Li, Ruiqiang, Li, Heng, Lu, Jianliang, Li, Yingrui, Bolund, Lars, Schierup, Mikkel H., Wang, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory Press 2013
Materias:
Resource
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3530679/
https://www.ncbi.nlm.nih.gov/pubmed/22972939
http://dx.doi.org/10.1101/gr.132480.111

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3530679/
https://www.ncbi.nlm.nih.gov/pubmed/22972939
http://dx.doi.org/10.1101/gr.132480.111

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